BAC Information

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BAC

Clone NameMSMg01-234H19
Chromosome12 (Build37)
Map Location 78,277,897 - 78,278,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEsr2, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneFut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234H19.T7 (MSMg01no234_h19.b1)MSMg01-234H19.TJ (MSMg01no234_h19.g1)
ACCAG400362AG400363
length751736
length of high quality
(start - end)
---353 (384 - 736)
definitionCHROMAT_FILE: MSMg01no234_h19.b1 PHD_FILE: MSMg01no234_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:29 2005CHROMAT_FILE: MSMg01no234_h19.g1 PHD_FILE: MSMg01no234_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTTGACTTTTTCTAAGACAGTAACCTGTGCCATTATTTGTGTG
GATCGGTATCTTCATCAGATTATTCCCCTTGATCTGTTGGAGATCCCTGA
GCTGAAGATGTACGTTGAATACCAGAGTGCCTCATGTCTATCCTACGTCG
ATTAGGTGTGTTGATTCTGTGGAACTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
X
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGAAAACCTAAGGCCAGTGCCTGAA
ATAACTGTGAGCATTGTTCTAGACCCCATGCGCAAAGAGACAGCCCCAGG
TGTGGGAGGAAGTGGCTGAGGTGGTCTGAGGACACAGTGAGCTCTCTGAA
GGGGCGGGCCAGAGGACAGGACATATTTTAAGCAGCCTTAGAAAGACTCC
TTTTAGCATTCTGCAGGAAATGGAAAGCAGATGGATTGGTTTGAAACTTG
TTTTTGGTTTTGTTTTTGTTTTTTTCTGTCCCCTTGAGACTTGCGGGGCA
GAGTTAGAAGTGTTATGGTAACGCGCCTCACTAAATACTGTACTGACAGA
CGGAGGCCTCCCTGTGTCAGAGCATCTTGAGAAACAGCTATTTAGGCCAA
AGGGCTTTCATTTGCCTTGTCTTATACAAGTCTGGCTAGAATAAATAGCT
ACGTGGTTTGCAGCACAGATCTGTCTGTGTCATGGTGGTTGTTAGTGACC
GGATCTTGTCAGTCTCTGTAGAACAAGGATACAGAACCCAGAGCTACAGG
CAGCAGCCAAGGAGTTTCCCGAACTTTCCAGGGACCTCGAGTTGAATAAA
TCTGGATTCTCCACACAGAAAGGAATTACAGGATGAGCCAGTATATACAG
CAGGGTTAGAGTTTTATTAAGAACAGAAAGGCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_h19.g1 MSMg01no234_h19.g1 CHROMAT_FILE:
MSMg01no234_h19.g1 PHD_FILE: MSMg01no234_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:29 2005
         (353 letters)



>mm_chr12_78277697_78278449
          Length = 753

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatactgtactgacagacggaggcctccctgtgtcagagcatcttgagaaacagctattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatactgtactgacagacggaggcctccctgtgtcagagcatcttgagaaacagctattt 494

                                                                       
Query: 61  aggccaaagggctttcatttgccttgtcttatacaagtctggctagaataaatagctacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aggccaaagggctttcatttgccttgtcttatacaagtctggctagaataaatagctacg 434

                                                                       
Query: 121 tggtttgcagcacagatctgtctgtgtcatggtggttgttagtgaccggatcttgtcagt 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 433 tggtttgcagcacagatctgtctgtgtcttggtggttgttagtgaccggatcttgtcagt 374

                                                                       
Query: 181 ctctgtagaacaaggatacagaacccagagctacaggcagcagccaaggagtttcccgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctctgtagaacaaggatacagaacccagagctacaggcagcagccaaggagtttcccgaa 314

                                                                       
Query: 241 ctttccagggacctcgagttgaataaatctggattctccacacagaaaggaattacagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctttccagggacctcgagttgaataaatctggattctccacacagaaaggaattacagga 254

                                                                
Query: 301 tgagccagtatatacagcagggttagagttttattaagaacagaaaggcagtt 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cgagccagtatatacagcagggttagagttttattaagaacagaaaggcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)