BAC Information

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BAC

Clone NameMSMg01-235D13
Chromosome12 (Build37)
Map Location 97,459,213 - 97,459,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik
Downstream geneLOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235D13.T7 (MSMg01no235_d13.b1)MSMg01-235D13.TJ (MSMg01no235_d13.g1)
ACCAG400865AG400866
length715715
length of high quality
(start - end)
656 (46 - 701)639 (77 - 715)
definitionCHROMAT_FILE: MSMg01no235_d13.b1 PHD_FILE: MSMg01no235_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:29 2005CHROMAT_FILE: MSMg01no235_d13.g1 PHD_FILE: MSMg01no235_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATAACACCCGAGACTCTGAAACTCATAGAGGAGAAAGTAGGG
AAAAGCCTCAAAGATATGGGCATAGGGGAAAAATTCCTGAATAAAACAGC
AGTGGCTTGTGGTGTAAGATCGAGAATCGACAAATGGGACCTCATAAAAT
TGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAAGAAAGGCC
ACCAACAGTTTGGGAAAGGATCTTTACCTATCATAAATCATATAGGGGAC
TAATATCCAATATATAAAGAACCCAAGAAGTTGGTCTCCAAAAAAATCAA
ATAACCCCATTAAAAAATGGGGCTTAGAGCTAAATAAAGAGTTCTCACCT
GAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACTTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGATGACAGCAGATGCTGGGGA
GGATATGGACAAAGAGGAACACTCTTCCATTTTTGGTGGGATTGCAAGCT
TGTATAACCACTCTGGAAATCAGTCTGGCAGTTCCACAAAAATTGGACGT
AGTACTACTGAAGGATCCTGCAATACCTCTCTTGGAAATATATCCAGAAG
ATGTTCCAACTGGTA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTTGAAGAATACCAAAACAAA
TATCGTCCAACTTACAGTTTTAGTTTGTCCTCACTTCTGACCTGCTAATT
TCTTTGAGAATAAGTTTGTTTTCTTAAGTCAATGATAATTTAAAAATGAA
TCCCATGTCTTAAATAGCAATGAACATAAACTATATATCCATCAACACAA
ATATATTTAGGTTGGTTGGAGTAATAAATAAGTAAATAAAACGTACTGAA
AATACCACTAACATGTCTATCCATAGAGACGGTAGTAAAGAAGATTCCTA
AATGGACAAAGAGGTATCTTGTCATATAGTTCACCCATCCTTTAAATTCA
CATGCAACCTCCATCCTTAGTAGACCATCTTTCTAACTACCAACATTTAA
GCAGATTTTCCAGGGTGCATTTGTTGGAGTATAAATACAATATTCCTAAA
TTATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
ATTCTTTCTTTCTTTCTTTCTTTAGATCTCATTATGGGTGGTTTTGAGCC
ACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGG
GTGCTCTTACCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_d13.g1 MSMg01no235_d13.g1 CHROMAT_FILE:
MSMg01no235_d13.g1 PHD_FILE: MSMg01no235_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:30 2005
         (639 letters)



>mm_chr12_97459013_97460051
          Length = 1039

 Score =  783 bits (405), Expect = 0.0
 Identities = 426/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtttgaagaataccaaaacaaatatcgtccaacttacagttttagtttgtcctcactt 60
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtttgaggaataccaaaacaagtatcgtccaacttacagttttagtttgtcctcactt 260

                                                                       
Query: 61  ctgacctgctaatttctttgagaataagtttgttttcttaagtcaatgataatttaaaaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacctgctgatttctttgagaataagtttgttttcttaagtcaatgataatttaaaaa 320

                                                                       
Query: 121 tgaatcccatgtcttaaatagcaatgaacataaactatatatccatcaacacaaatatat 180
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaatcccatgtattaaatagtaatgaacataaactatatatccatcaacacaaatatat 380

                                                                       
Query: 181 ttaggttggttggagtaataaataagtaaataaaacgtactgaaaataccactaacatgt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttaggttggttggagtaataaataagtaaataaaacctactgaaaataccactaacatgt 440

                                                                       
Query: 241 ctatccatagagacggtagtaaagaagattcctaaatggacaaagaggtatcttgtcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatccatagagacggtagtaaagaagattcctaaatggacaaagaggtatcttgtcata 500

                                                                       
Query: 301 tagttcacccatcctttaaattcacatgcaacctccatccttagtagaccatctttctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagttcacccatcctttaaattcacatgcaacctccatccttagtagaccatctttctaa 560

                                                                       
Query: 361 ctaccaacatttaagcagattttccagggtgcatttgttggagtataaatacaatattcc 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ctaccaacatttaagcagattttccagggtacatttgttggagtataaatacaatattcc 620

                        
Query: 421 taaattattttct 433
           |||||||||||||
Sbjct: 621 taaattattttct 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)