BAC Information

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BAC

Clone NameMSMg01-235I10
Chromosome12 (Build37)
Map Location 94,813,816 - 94,814,125
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235I10.T7 (MSMg01no235_i10.b1)MSMg01-235I10.TJ (MSMg01no235_i10.g1)
ACCAG401071AG401072
length726739
length of high quality
(start - end)
314 (46 - 359)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no235_i10.b1 PHD_FILE: MSMg01no235_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:53 2005CHROMAT_FILE: MSMg01no235_i10.g1 PHD_FILE: MSMg01no235_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGTATATCATTGTGATCCTTTTATATTTTTATTCCCTCCAACT
CCTGACCTGTCCATTTTCCACATTCACATATTCTTGTTTTAATCTGTGAC
CCTCTGACTATCCAGGAAAATATATGTAGATATTGGTTTAGAGCTATCTA
ATAAATACCGATGGGTTCACTATTTTTTAACTGACAACTGATGACAACCA
ACCTGTCTCAGGAATCCATGAGATGTCAGTAATTTAATAGCAATGGTAAG
GCCTTATGAGTGTCTTCCCAATCCTTTATTGGTTGTTTATGGAACAACAC
ATATCATTATTATTACACACCCACACGCATACGTATCATTAAAAGTGAAA
AATAAAATACTAAAAAAAAATTAACATGATGGTTGGAAAAGTCCTTTCAA
AGAAATTCTTGATTGTAGAGGTTCTGTGGAGGGTACCAGAGCTTCTGTGA
AATCATGGGTGCAGTAAATGTGTCATGACCTGAGCTATCAACCTACAATT
TGTTCCCCGTTTTCTGGCTCTTATACTCTTCTCTCTCTGTTCCACAACAG
CCTTAGATAGTTCATATATAAATTTTCTGTTCATGGTTGAATTTCTAAGC
TTCCATTTATTCTAGGCATCTTAGATATCCACAAGTCTGTGATTCAGCTC
TGTTTAGGTCAAAGTGAAATTCTGAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATGGAAAATGAAAGCAAGGACT
CCAGTCCCTAAGGAGATAGAAAAACAAACTGAATCAAGTAACCTAGATGC
TTGGGACTTTCAGAGACTGAAAGAACTAAAGAACATACATGGGCTGGACT
TAGGTTTCCCAGGATATGCATAACAGATGTGCAGCTTGGTCTTCATGTGG
ACCCTGAACAACTGGATTGGTTGCTATCCCCAAAGCTGTTGTTGCCTGTC
TGCGAGATATGTTTTTTTCTATCTGGGATGCTTTACCTGGCTTCAGTGGG
AGAGGATGTTTTTAACCCNAGGCAGAACCATACCAGCGTGGGGAGATACC
CAGGTGTGCGCCACCCACTCAAAGAAGAAGAAGAAGCGGTGGGGAGGAAT
TGTGTGAGAGGGTAGTGAGTAGTAACATGAATAAGTAAAAACAATAATAA
TAACAATAATAAAAACATAAAAATTATTACTGGCTTGGATGGGAATTAAT
ATAGGTATGCATAGAAGTAATTGCTCCAAAGTGATATGTCCAATATCAAG
TACATAGGTAAAGGTTAATGGTAATGTTGGAGGTAATACACTAATTACTC
TTGTGTTTATCTGTTATTTAATTTTTTATGGCTATGATACTTCTAATTTT
GTGGTCCAAAATCTTTAATTATTGTGCGCCTTTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_i10.b1 MSMg01no235_i10.b1 CHROMAT_FILE:
MSMg01no235_i10.b1 PHD_FILE: MSMg01no235_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:53 2005
         (314 letters)



>mm_chr12_94813612_94814325
          Length = 714

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtatatcattgtgatccttttatatttttattccctccaactcctgacctg 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctgtgtatatcattgtgacccttttatatttttattccctccaactcctgacctg 455

                                                                       
Query: 65  tccattttccacattcacatattcttgttttaatctgtgaccctctgactatccaggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tccattttccacattcacatattcttgttttaatctgtgaccctctgactatccaggaaa 395

                                                                       
Query: 125 atatatgtagatattggtttagagctatctaataaataccgatgggttcactatttttta 184
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atacatgtagatatcggtttagagctatctaataaataccgatgggttcactatttttta 335

                                                                       
Query: 185 actgacaactgatgacaaccaacctgtctcaggaatccatgagatgtcagtaatttaata 244
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 334 actgacaactgatgacaaccaacctgtcccaggaatccttgagatgtcagtaatttaata 275

                                                                       
Query: 245 gcaatggtaaggccttatgagtgtcttcccaatcctttattggttgtttatggaacaaca 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcaatggtaaggcctcatgagtgtcttcccaatcctttattggttgtttatggaacaaca 215

                     
Query: 305 catatcatta 314
           ||||||||||
Sbjct: 214 catatcatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)