BAC Information

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BAC

Clone NameMSMg01-236C15
Chromosome12 (Build37)
Map Location 55,188,521 - 55,188,744
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap6, Npas3
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236C15.T7 (MSMg01no236_c15.b1)MSMg01-236C15.TJ (MSMg01no236_c15.g1)
ACCAG401508AG401509
length719702
length of high quality
(start - end)
674 (46 - 719)229 (110 - 338)
definitionCHROMAT_FILE: MSMg01no236_c15.b1 PHD_FILE: MSMg01no236_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:40 2005CHROMAT_FILE: MSMg01no236_c15.g1 PHD_FILE: MSMg01no236_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTTCTGCACATTGTCCAGTCGAGGGTCTCTATGTAAGCTCA
CATCTACTTCCAGATTCACCTTCTCTGAGCAAGACACTGATCCGTGGGTA
TGTCTGCATGTTGTTAGAAGGCATTTCCTTGTTATATTCTTTTGGCTGAA
TTTGGTTATCCCTTAGGTCTTTGGCCTAGTTAGTGTCAGGTCCTTGGCCA
CCAGAGCAGTGTCAGTCTGGCATGGGTTCCATCTCAAATCTGTTTAGATA
GCAGTTGGTTAATCCCTCTATTTTTGTGCCACTAATGTGTTCCAGAGTGT
CAGGTATGCAGGTCACCACTGTGGACTGAAGGGTTTAGAGCTGGGTTGAA
TTTTACCTTCTCCTCTGGTGGTGTGTAGAGTACTGCCCAGTACTGTGAAC
ACTAGTCAGGAGGGGGCATGGCTCTAGCTAGGCACCAGCTTGACTTCTCC
ATGTTCAGTGAAATATGTGAGTGTTGTCTACAGCCATAGAACCTTATCAT
CAGCTTGTAGAGAGTTGTTTGGAGATTTCCATGGGGCCCCATGGCTAACC
CACTCCTGGCATGGGAAGTTATATTTGGTGCCAAGAGATGTCTAGTTGGG
GTGTTGTCATACACACCCCCATTATTTGGTGTCTCCATTTAGAGTTCTTT
CATATATGTATATATTTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTCTTCTTCTGTGGTTTGAGCTTCACACACACACACACA
TTCACCCACACACACACACACACACACACACGCACACACACACACATCCC
CAGCCAGTCGTGCCCTGTTCTCTAGGTGTGCCATCTCTTTAAGTGTGTTA
ACAGTTAGTCATGCAGGGGACAGAGCCACGGTCTGAGACACTGGCCTGTC
CCCTCCAGGGAGCTGCGCATATCTTTCTCTGCTGTGTTGACTGTCTCATG
TATTCTCACAGCTGTTGCTCCTTCTAGGAGAAATGGCTTCTTATGATTCA
CCCCCTCCCCCCTGGAGAATACAAGCCTGCTTGAAATGGAAGTTCAGAAA
TGACAAATTTAACCTGTTCTTACAGACCCTGTTTTATCCCCAGACAGACA
AATCTGAATATTCTAGAACAACAAAAACAAAATCAGTGTATTTGTCAGAA
TTTGCTGCTTTGTCAAAGCACTTTTAAATGGACACACTAAATAGTCATAT
GTCATAATGATTTTGTTGTTGTTGTTGTTGTTTTTCGAGACAGGTTTTCT
CTGTATAGCCCTGGCTGTCTTGGAACTTCACTTTGTATATCAAGCTGCCC
TTGAAATCATAAACCTGTCTGCCTCTGCCTCTCGAGCGCTGGGATAAAAG
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_c15.g1 MSMg01no236_c15.g1 CHROMAT_FILE:
MSMg01no236_c15.g1 PHD_FILE: MSMg01no236_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:40 2005
         (229 letters)



>mm_chr12_55188316_55188944
          Length = 629

 Score =  402 bits (208), Expect = e-117
 Identities = 220/224 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   cacacacacacacacacgcacacacacacacatccccagccagtcgtgccctgttctcta 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cacacacacacacacacacacacacacacacatccccagccagtcgtgccctgttctcta 265

                                                                       
Query: 66  ggtgtgccatctctttaagtgtgttaacagttagtcatgcaggggacagagccacggtct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 ggtgtgccatctctttaagtgtgttaacagttagtcatgcaggggacagagccacagtct 325

                                                                       
Query: 126 gagacactggcctgtcccctccagggagctgcgcatatctttctctgctgtgttgactgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagacactggcctgtcccctccagggagctgcgcatatctttctctgctgtgttgactgt 385

                                                       
Query: 186 ctcatgtattctcacagctgttgctccttctaggagaaatggct 229
           ||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcatgtagcctcacagctgttgctccttctaggagaaatggct 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)