BAC Information

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BAC

Clone NameMSMg01-236C17
Chromosome12 (Build37)
Map Location 73,140,050 - 73,140,223
singlet/doubletsinglet
Overlap genenone
Upstream geneArid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213
Downstream geneLOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236C17.T7 (MSMg01no236_c17.b1)MSMg01-236C17.TJ (MSMg01no236_c17.g1)
ACCAG401512AG401513
length718859
length of high quality
(start - end)
235 (100 - 334)175 (77 - 251)
definitionCHROMAT_FILE: MSMg01no236_c17.b1 PHD_FILE: MSMg01no236_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:40 2005CHROMAT_FILE: MSMg01no236_c17.g1 PHD_FILE: MSMg01no236_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTCGGAGAGGATCCGCGGAATTCCTGATCTTTCAAGACTTTTAT
CATGAATGGGTGTTGGATCTTATCAAATGCTTTCTCCACTTTTACCCAGA
TGATTATGTGGTTTTTGTCTTTGAGTTTGTTTTTATAATGGATTACGTTG
ATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGCAA
GAATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAATTTGGTCTG
GAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTGTTATCACAGCAATT
GTGGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTACTTCAATTTTGTG
GAATAGTTTGTGCAGAACTGGAATTACATCTTCTTTGAAGGTCTGATAGA
ACCCATCAGACTAAACCCATCTGGTCCTGGGCTTTTTTTGACTGGGAGAC
TATTAATGACTGCTTCTATTTCTTTAGGGGATATGGAACTGTTTAGATCG
TTAACTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTT
GTCCATTTCGCCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGCAGA
ATGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCC
TTTTCGTATCCGATTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAACATTTGCCAAATGGTTGACA
GCGAAAAATTGTTGTCTCTTCTTTCTTGCTCTTGCTCCTCTCTATTAGCT
GAAACACAAGCCAGTCTGAAGATAATCCACCCATGGGAAAGGCTGAACTA
CAGCAAAGTGGGGGAGGGTTGGGGGGAGAGGAGAAAAAGAAGAAGGAGGA
GGATACTGTTGTATAACCGGCCATAACCTGTAAACCATACACCTACAGGA
TCTGCCTTTCTCAAACAAATTTTTTTTTTATGAGAGCCCTACAATTTCCT
ACAACAAAATTTTTTTTTTTTTCCCCCCCCCCCCCCTGCTTGTGTCACTT
ATAATGTGATTGTATTAAGGAAACTCCTCAATAACAAAAAATATAACACT
GAGGCGTGCCGTGGTCTAGCTTCCATGCTCTTCAAATACCGGCATTTCTT
ATACCCAAATTGTATGCCACTGTACAAGCCGAGATCTCTCCTTTACTTAT
AAAAAACTAAATCGTATAATATATCTCTATACATGTTTGTAACCATGATT
ATCTCCCAAATATATACGCATACTCCCATTCGAATCCTCTATACCGTATC
TATATCTCCCACCACCTGCTCAATTTTCCTTATCCCATTTTTCTCCTCTT
CTCTCTTACCCTTTCTCCACTCATCTTCCATTCCCTACCTTTTTTCATTA
CTTGCCTCTTGCCCCCTTTATTATTTATACTCCTTCTACCCCGTTTTTTC
TTCCGCCCTATCTTTATCACTCTTCATTTTATAACCCCCGTTTATAATTT
TTTGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_c17.g1 MSMg01no236_c17.g1 CHROMAT_FILE:
MSMg01no236_c17.g1 PHD_FILE: MSMg01no236_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:40 2005
         (175 letters)



>mm_chr12_73139847_73140423
          Length = 577

 Score =  298 bits (154), Expect = 1e-85
 Identities = 169/174 (97%), Gaps = 2/174 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   acatttgccaaatggttgacagc-gaaaaattgttgtctcttctttcttgctcttgctcc 62
           ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 204 acatttgccaaatggttgacagcggaaaaattgttgtctctcctttgttgctcttgctcc 263

                                                                       
Query: 63  tctctattagctgaaacacaagccagtctgaagataatccacccatgggaaaggctgaac 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatctattagctgaaacacaagccagtctgaagataatccacccatgggaaaggctgaac 323

                                                                 
Query: 123 tacagcaaagtgggggagggttggggggag-aggagaaaaagaagaaggaggag 175
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 tacagcaaagtgggggagggttggggggaggaggagaaaaagaagaaggaggag 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 577
Length adjustment: 8
Effective length of query: 167
Effective length of database: 569
Effective search space:    95023
Effective search space used:    95023
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)