BAC Information

Click to search

BAC

Clone NameMSMg01-236E21
Chromosome12 (Build37)
Map Location 15,502,556 - 15,660,219
singlet/doubletdoublet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236E21.T7 (MSMg01no236_e21.b1)MSMg01-236E21.TJ (MSMg01no236_e21.g1)
ACCAG401602AG401603
length743758
length of high quality
(start - end)
273 (371 - 643)309 (439 - 747)
definitionCHROMAT_FILE: MSMg01no236_e21.b1 PHD_FILE: MSMg01no236_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:50 2005CHROMAT_FILE: MSMg01no236_e21.g1 PHD_FILE: MSMg01no236_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,502,556 - 15,502,828)(15,659,911 - 15,660,219)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGGGCGCGGAATTCAATTTC
CTTTCCCAAAAACTACAGAAGTTGAAACTAATAGATTGATGCTATATGAG
TTATACTTTCATACGTGTGCATGAATAACTGAATTTATGTGGAACTCAGA
ACTATATGCACTGCCTGCCTTAGGCTTGGTAGGAGACTAGGGGTGAAGAT
GGGCTCCTGGCTGTAGCATATTCTTTAGAATCACAGAGTATGATTAACTG
AGTGAAATGTTCATTATTACAAACATGTATGTAACACTCTGAAAGCCCCC
TCCTCCTTTCCTTCCTTGACTCACCCAACTGGCTACCTTCATTCTCCTTA
TTATTATTCACCTGATCGTTCACATAGCTGAACATTTAAAGACTTTAGCA
ATATAATTCTATTCTTCTTGATGCTAGTATTTTCATGAGTAGCATGGCAA
ACATGACTCTTGTTTTTGATTCCCAAATAGTGCCTTACTTAAGTTCAAGG
GAAAAAAATGTGACTAAATATGTGATTGACTGGCCATTTTTGGTCTATCA
GTTCATCCAGCATTTCAAATGTTTCCCTTAATCTGCTGGTTTAAACTTAT
CGAATAGGTATAGAGAGCCCATTTCTCTCAATTACTCTTTTGGTGATTGT
GCATCTATTTTTTAGCTCTCAATTTTTATAATATATCTTCTCGATTGTTT
TTGATAAACTGAATTTTCATTTGCTCTTCTTCAGTTTCCCGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTTGGAACTGAGTAGCAAACAC
ACACAACGGTTGTGGATCTTTTTCCCACAGCCAGCCAAGGTGTGACAACA
GACATTGCACAACACTCTTTGATGCAATGTTCTTGTTTGAGGGGGCAGGA
GGTGGTTGGGAACTGCCTGCAAGCCATTTCAGTCACTGGGACATGAGCTC
ACCATTTCCAGACAAGAAGCTTCTGAAACCATTTAGTCTGCCTTGACAGT
GAGGTGTTAGAGAAGAGGCTGGTCGATGAGCAGCTGCAGAGTTGACGGAT
GTTTCCCAATGTTAGTCGTCACTCCACCCCCCCACGAAAGTGCTTGCACC
ATCCTGTTGCAGTACGAAACCCATGCCCTAAAAAAAGCTGGCAAGCTCTA
GCCCATGCAAACAAATGTGTTTAAAGATAGACTGCTCATTTTATGATGGG
TGTATGTTGAAACAGGACTCCCTGGCTTTCCATGAAGCCTAAAGGCACAG
TCTGAAGTTTTAATCACACATGAAGATATTTAAAGGGGCAAATACAGACA
ACTCTTTATCTGTTTATATGACCTAAGGACATTGCATTTACTACCTAAAA
ACTACATTTGTAGACCTTTTTGCTCTTGAGTTTAAGTTCCTCAAAAAATG
GCACAGGAATGCAATTATTTTCTGCATTCCTTGCACGGATCATGAACACA
GGTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_e21.b1 MSMg01no236_e21.b1 CHROMAT_FILE:
MSMg01no236_e21.b1 PHD_FILE: MSMg01no236_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:50 2005
         (273 letters)



>mm_chr12_15502356_15503028
          Length = 673

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatagctgaacatttaaagactttagcaatataattctattcttcttgatgctagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatagctgaacatttaaagactttagcaatataattctattcttcttgatgctagtat 260

                                                                       
Query: 61  tttcatgagtagcatggcaaacatgactcttgtttttgattcccaaatagtgccttactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatgagtagcatggcaaacatgactcttgtttttgattcccaaatagtgccttactt 320

                                                                       
Query: 121 aagttcaagggaaaaaaatgtgactaaatatgtgattgactggccatttttggtctatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcaagggaaaaaaatgtgactaaatatgtgattgactggccatttttggtctatca 380

                                                                       
Query: 181 gttcatccagcatttcaaatgtttcccttaatctgctggtttaaacttatcgaataggta 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcatccagcatttcaaatgttttccttaatctgctggtttaaacttatcgaataggta 440

                                            
Query: 241 tagagagcccatttctctcaattactcttttgg 273
           |||||||||||||||||||||||||||| ||||
Sbjct: 441 tagagagcccatttctctcaattactctattgg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no236_e21.g1 MSMg01no236_e21.g1 CHROMAT_FILE:
MSMg01no236_e21.g1 PHD_FILE: MSMg01no236_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:50 2005
         (309 letters)



>mm_chr12_15659711_15660419
          Length = 709

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcaagctctagcccatgcaaacaaatgtgtttaaagatagactgctcattttatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tggcaagctctagcccatgcaaacaaatgtgtttaaagatagactgctcattttatgatg 450

                                                                       
Query: 61  ggtgtatgttgaaacaggactccctggctttccatgaagcctaaaggcacagtctgaagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 449 ggtgtatgttgaaacaggactccctggctttccatgaagcctaaaggcacagtctgaaat 390

                                                                       
Query: 121 tttaatcacacatgaagatatttaaaggggcaaatacagacaactctttatctgtttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttaatcacacatgaagatatttaaaggggcaaatacagacaactctttatctgtttata 330

                                                                       
Query: 181 tgacctaaggacattgcatttactacctaaaaactacatttgtagacctttttgctcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgacctaaggacattgcatttactacctaaaaactacatttgtagacctttttgctcttg 270

                                                                       
Query: 241 agtttaagttcctcaaaaaatggcacaggaatgcaattattttctgcattccttgcacgg 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 269 agtttaagttcctcaaaaaatggcaaaggaatgcaattattttctgcattccttgcacgg 210

                    
Query: 301 atcatgaac 309
           |||||||||
Sbjct: 209 atcatgaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)