BAC Information

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BAC

Clone NameMSMg01-236H06
Chromosome12 (Build37)
Map Location 35,377,340 - 35,511,132
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236H06.T7 (MSMg01no236_h06.b1)MSMg01-236H06.TJ (MSMg01no236_h06.g1)
ACCAG401704AG401705
length772781
length of high quality
(start - end)
238 (186 - 423)241 (192 - 432)
definitionCHROMAT_FILE: MSMg01no236_h06.b1 PHD_FILE: MSMg01no236_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:01 2005CHROMAT_FILE: MSMg01no236_h06.g1 PHD_FILE: MSMg01no236_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,377,340 - 35,377,575)(35,510,892 - 35,511,132)
sequence
CCCCTTCCCCCTTCCCTTTTCCCAATTCCTCATTAACAACCCCCCCNNNC
CCCCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCCTACTCATCTCCCAGAAGGAACAATGCTCTGAGGGCC
ACAGGTTTCCATTTTAGAAGAATAATTGAACCCCTAGCCTATTGTGGATT
CAATCGAGAACTCTGCCAAAAGGGACCATGTGATACAACGGTAAGAACAG
GAATGCTTCTGTGTGGGTGTGTCTGTTAAAGCTGCCTTGTTCCAAACAGG
ACTTGAAACTTAATTTCTGGCATCTCAAACTTGAATACAACATACTCCTT
CCCAGATGATCCGCTGAAGGCTTTACTTCTTAGTTTTTACATACACATCC
ATTATCGACCAAATTGTCAGATATTAAGTTCACAGTTATCAGTGAAAATG
ATCTGTCATTCCAACTCATATAAGTACTCAAAGGTAGAGGCAGTTCTCCG
AAGACTTTGTTTCTCTGGGTTCTGCATCTGCTGAGAGCTTCTGGGAAGTA
TGCATCTTAGGTTGCATCCAGCCTGGGTGGATGATTGTCTGCATTCGGAC
AGGACTCTGATAGGTGCTTTAACGTTTGAGAAATGCTACCATAGGAAATC
TGTAGCAAGGCACTCCATTTGTGCTTTTAAATTTATTCCTCACAATTACT
CTGCAGGTTAGCTATTATCATTTTTGTCCTTAACATTTTATTTTCTTTAT
GTAAATTTCAAAAGCTATTCTA
CCCCCCTTTTTCCTTTTTCCATTCTTATCAATACTTATATACCAAATCCT
TCCCCTTTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCCCTTCTCTAAC
ACCATGTCTGCCTGCATGCTGCCATGCTTCCCGCCATGGTGGTAATGGAC
TGAACCTCTGAACCAGTGAGCCAGTCTCAATTAGATATTTTTCTTTATAA
GAGTTGCCATGGTCATGGCGTCTTTTCACAGCAAGAACAACCCTAACTTA
GATAGCATTTGAGAGGAGACCAAGAGTTGATCATTTGTACAAGGTCCCTT
TGGGAAGGATGCTATCGCTCTGTGTAGAACAAGATTTGGAATTGCAGATC
TCAGTTTTTCCTCTTTTTCTTCTCTCTTTTTACCTCCAAAGAGCCTGTTG
AAGTGTATTCTGTGAGGTGTCTTGTCCACTACAGATATAGGACAGGATTA
TCAACCTTTCTATTGAGACAAAAATATGATCTTTATTCTCCACACAGCAT
TTAAATATGTGGGTATTTATTTTAATTTACACTCAGCATCTCAAAATTGC
ATAGTTAAAAAAGGTACTTAATTTACAGCCACCATACTGAAATATAGGTT
TTTTTTTCCTCAAAGAAACATTATGGCAATTAGAGTATACTTATCTTTGC
CTCTCAGAATATTGATTTTATTATACTGATTTTTAGGAAAAATACCCCCT
TGAAGCTTGCTTTTTTTAAGCCCCACCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_h06.b1 MSMg01no236_h06.b1 CHROMAT_FILE:
MSMg01no236_h06.b1 PHD_FILE: MSMg01no236_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:01 2005
         (238 letters)



>mm_chr12_35377140_35377777
          Length = 638

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctattgtggattcaatcgagaactctgccaaaagggaccatgtgatacaacggtaag 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 agcctattgtggcttcaatcgagaactctgccaaaagggaccatgtgatacaacggcaag 260

                                                                       
Query: 61  aacaggaatgcttctgtgtgggtgtgtctgttaaagctgccttgttccaaacaggacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaggaatgcttctgtgtgggtgtgtctgttaaagctgccttgttccaaacaggacttg 320

                                                                       
Query: 121 aaacttaatttctggcatctcaaacttgaatacaacatactccttcccagatgatccgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaacttaatttctggcatctcaaacttgaatacaacatactccttcccagatgatcctct 380

                                                                   
Query: 181 gaaggctttacttcttagtttttacatacacatccattatcgaccaaattgtcaga 236
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaaggctttacttcttagtttttacatacacatccattatcaaccaaattgtcaga 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no236_h06.g1 MSMg01no236_h06.g1 CHROMAT_FILE:
MSMg01no236_h06.g1 PHD_FILE: MSMg01no236_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:01 2005
         (241 letters)



>mm_chr12_35510579_35511219
          Length = 641

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaatggactgaacctctgaaccagtgagccagtctcaattagatatttttctttataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtaatggactgaacctctgaaccagtgagccagtctcaattagatatttttctttataag 495

                                                                       
Query: 61  agttgccatggtcatggcgtcttttcacagcaagaacaaccctaacttagatagcatttg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 agttgccatggtcatggcgtcttttcacagcaagagcaaccctaacttagatagcatttg 435

                                                                       
Query: 121 agaggagaccaagagttgatcatttgtacaaggtccctttgggaaggatgctatcgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agaggagaccaagagttgatcatttgtacaaggtccctttgggaaggatgctatcgctct 375

                                                                       
Query: 181 gtgtagaacaagatttggaattgcagatctcagtttttcctctttttcttctctcttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgtagaacaagatttggaattgcagatctcagtttttcctctttttcttctctcttttt 315

            
Query: 241 a 241
           |
Sbjct: 314 a 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)