Query= MSMg01no237_f04.b1 MSMg01no237_f04.b1 CHROMAT_FILE:
MSMg01no237_f04.b1 PHD_FILE: MSMg01no237_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:07 2005
(291 letters)
>mm_chr12_98698601_98699291
Length = 691
Score = 511 bits (264), Expect = e-149
Identities = 285/292 (97%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 1 ctctggctgcaaataaaaaccaagaacacaagctgagaccaaattatccccacaaaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctctggctgcaaataaaaaccaagaacacaagctgagaccaaattatccacacaaaggtg 260
Query: 61 ggatgataaagaattcaacaatttaagcaaaattagaaatatattttaattagcatataa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgatagagaattcaacaatttaagcaaaattagaaatatattttaattagcatataa 320
Query: 121 aaccatgaaaaattgcataatgcttctatcttgtgcagatcattcagcacttcttacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aaccatgaaaaattgcataatgcttctatcttgtgcagatcattcagcactacttacttt 380
Query: 181 agagtacaagtcttataatagataccatgagaattata-tttataatttgaatttatttt 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 agagtacaagtcttataatagataccatgagaattatactttataatttgaatttatttt 440
Query: 240 ctaattataatcaatcaaaaattaatattcactaactaaaagcactacagct 291
||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ctaattaaaaccaatcaaaaattaatattcactaactaaaagcactagagct 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_f04.g1 MSMg01no237_f04.g1 CHROMAT_FILE:
MSMg01no237_f04.g1 PHD_FILE: MSMg01no237_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:08 2005
(299 letters)
>mm_chr12_98849946_98850644
Length = 699
Score = 516 bits (267), Expect = e-151
Identities = 291/303 (96%), Gaps = 8/303 (2%)
Strand = Plus / Minus
Query: 1 ggagtggagttgtaaggggaagcctctcttgtatttaaaggcaact----gtaccccgtg 56
|||| ||||||||||||||||| ||||||||||||||||||||||| | | |||
Sbjct: 499 ggaggggagttgtaaggggaagtctctcttgtatttaaaggcaactggaggaa----gtg 444
Query: 57 ctccttttgttaccataattttcccttgctaaatttatacaatctttcctctttagattc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctccttttgttaccataattttcccttgctaaatttatacaatctttcctctttagattc 384
Query: 117 cacctaatatcaagcaattctcctgccctgaatgttattataggtccttttgctctttgt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacctaatatcaagcaattctcctgccctgaatgttattataggtccttttgctctttgt 324
Query: 177 aaacatcgagaacaggcaaccttattctaaaaaccccaaaccgtgaaatgcttcaatatc 236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacattgagaacaggcaaccttattctaaaaaccccaaaccgtgaaatgcttcaatatc 264
Query: 237 tgacacttttttacatattgtcaagatggcttaaatggaaaattccacagcatgaaaatt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgacacttttttacatattgtcaagatggcttaaatggaaaattccacagcatgaaaatt 204
Query: 297 cat 299
|||
Sbjct: 203 cat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
