Query= MSMg01no237_k20.b1 MSMg01no237_k20.b1 CHROMAT_FILE:
MSMg01no237_k20.b1 PHD_FILE: MSMg01no237_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(279 letters)
>mm_chr12_80096229_80096907
Length = 679
Score = 485 bits (251), Expect = e-142
Identities = 269/275 (97%)
Strand = Plus / Minus
Query: 5 gaattccaaggctgtggcataaacatttgaggttctatagtatgtttctcagcagagatg 64
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 432 gaattccaaggctgtgggataaacatttgaggttctatagtatgcttctcagcagagatg 373
Query: 65 ccgttggctctggtgcccttttgacctctttaaatgtcacaggacttcagaggagtctct 124
|||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 372 ccgttggctctggtgctcttttgacctctttaagtgtcacgggacttcagaggagtctct 313
Query: 125 acttcattggcttcttctgagtcctgaccgtggctcccatggagctgctgtcattgacca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acttcattggcttcttctgagtcctgaccgtggctcccatggagctgctgtcattgacca 253
Query: 185 tgatctactgtgttttgaaaacactgcatcaaaatatcatttatggtagctcaagaaatg 244
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgatctactgtgttttgaaaacattgcatcaaaatatcatttatggtagctcaagaaatg 193
Query: 245 gctcactgattaagagtgcttgctgctgttgtgga 279
|||||||||||||||||||||||||||||||||||
Sbjct: 192 gctcactgattaagagtgcttgctgctgttgtgga 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_k20.g1 MSMg01no237_k20.g1 CHROMAT_FILE:
MSMg01no237_k20.g1 PHD_FILE: MSMg01no237_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(291 letters)
>mm_chr12_79955309_79956003
Length = 695
Score = 505 bits (261), Expect = e-147
Identities = 285/295 (96%), Gaps = 4/295 (1%)
Strand = Plus / Plus
Query: 1 aaaaatctcaattgccctttaatttacagatacaagaaaaatacttttagcgttttatac 60
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 aaaaatctcaattgccctttaatttacagatacgagaaaaatacttttagtgttttatac 260
Query: 61 atttactagaatatataatgacctttttttttgtttt----tttttcaatgaaaagaaac 116
| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 261 acttactagaatatataatgaccttttttttttttttggtttttttcaatgaaaagaaac 320
Query: 117 tcaccaaaagaatcaaattaccagtgaccatgaaaatctgtacaagctcacacataactg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaccaaaagaatcaaattaccagtgaccatgaaaatctgtacaagctcacacataactg 380
Query: 177 aaaatagcacagactgaagacaacacttcagcacagcagactggcaacaaatgaaaactt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatagcacagactgaagacaacacttcagcacagcagactggcaacaaatgaaaactt 440
Query: 237 cattactacccattaggatatatgtacgaaaacaagcagaagttaattataaact 291
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 cattactacccattaggaaagatgtacgaaaacaagcagaagttaattataaact 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 695
Length adjustment: 9
Effective length of query: 282
Effective length of database: 686
Effective search space: 193452
Effective search space used: 193452
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
