BAC Information

Click to search

BAC

Clone NameMSMg01-260K09
Chromosome12 (Build37)
Map Location 54,165,638 - 54,166,205
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneLOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260K09.T7 (MSMg01no260_k09.b1)MSMg01-260K09.TJ (MSMg01no260_k09.g1)
ACCAG403254AG403255
length1,788745
length of high quality
(start - end)		---596 (84 - 679)
definitionCHROMAT_FILE: MSMg01no260_k09.b1 PHD_FILE: MSMg01no260_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:48 2005CHROMAT_FILE: MSMg01no260_k09.g1 PHD_FILE: MSMg01no260_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGATATAAAATCAGAAGAGTNGNTAGAAGAGAGAAGTATATAAATAGATG
ATAGAGTATACGTCTATACTCCCAGAGTGAGTATCGCTGTTAGTGCGAGA
TATGTAATATAGTGATGATNGATATGTCCCGCCGGAGNCNGCGTGTCTTC
GTCTAGCGTGTCTATATAAGTATGAACACAATACAACAATATAAGTATAT
ATATGAGATAGACTAGACATTAGTATTATGTCATATGATNTATTTATTGT
GACGCCTAATCATAGAAATCTCGTNCGCTCCACNTCGATCGACATACCGC
ACANACACNTTNGTGANACGTCACGCGTGTGTACAGTGTCGAGTGAGGAA
NATCTAATCCNGCTCCNTCCGCTCTGCCGTTACCTGGTTTNACATGTATC
ACATGTGTNCTGGTCACATCTTCGTCTNNGATGTGTTGTATGGTTCTGTA
GGATCTCTCCGTCCTTCTACGTACGCTATCATTTCGCCATCTACCCTTCG
CCGCGCTCCTGNCCAGCCCGCTCGACGCTCGTGAGATCGTCATGAGTATC
GATGGACATANANCACAACTATGCATCTACTCGACATTCTATCAGATNTG
TATACACTCACGGTCTAACGTACTATGAATAATATGATATATAAGTATTC
ATTTTCTGCTTGCTACCTCCGTCTNACATCTTTGTCTATTAATGTATTAC
ATATGTGTATGTCTAATAGTTCAGAGTATGTTGTGTATTAAGTTAATGAT
AAGATGAAGATATATGCATACGACGAAGATAGCGAGAGAGAGAGTGACAT
GNATTACTGGAGGACGGCTANGCAGTATCAGAGTGATGATAGGACGTCGA
GTAACGAAGAGCGNAGACGAGACACGGTGCGTAGTGTATCTGTGCGTGTC
GTATCTGTCTGTCCCGACCACCACACCACTCATGGTGAGTGTGCGGATGT
TACATGGTCGTATGTGCTTNCAGTATCTGATGCATGTTAGATTACGATCA
CGTCTGATACTCNCATCTCATCAGTATAATGTGTGTATATTTAGGAGGTC
TGTATACTGATCATATTATTATGTAGGAAGCAGTCTTCTAGTCATCTATA
GANCGATTGTCTACACTACACGACATCATATCGATATATGATGTATTAGC
GTCGGAGTACTAGATAGTGCTGACTAGATCGCACTGCGTCTGTGCGAATA
TCTTACTNTATATCGAATTAGCATGATCTCGTACTANACACTCATCGTAC
TACTACACGAGCGACGCNCGCTCGTACGCCGACAAGCAGTATGTAAGGCA
CTACTTATTACGATGATCATACGTTAATTTGGNGTAGTCATCTATACTGA
TCAGTGTAGGCTCACTAGTGTCTATTACGTTCTATCATGGTACAATGTTT
AGAGTGTATATGAACAGCANCATGGCGAGTGTGTTCACGCGCATATATAT
CACAGTNGATATACTTATCTGCTNCGTGTGTATGCACGTCATATGTCGTC
TTCAGAGACTATGCATATGTTCGATACTGATCGATAGATATACTCGTGAN
CACGCTCGCGATGTATCGTCGTCGTGTGCGAGCTATCATGATATGTTAGC
ATGGCATGATGTGTCGTGTATATATCGTATATATGAGCGCGATCGCGTTG
TTGAGTAAGCGAGAGCTGAGCGAGTCAGGTGNCACAGTCGACGATCGACG
TCTGACTGTCATCTACGCACTGCGCTCTCTGTGCTGAGACTGAGTAGTGT
CTAGTCTGTCAAGTCACTCGAATAAAGAGTACGTAACN

NNNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATAATGCTCTAAAA
GCACACAGAGAGATTAAGACGTTCATTGTAAGACTTTTGTATGGTGCTTC
TGGTGGTCATGCTGAAAAGAGAGCAGACATTACTAAACGGAGAGAGCGAA
GCTTCGGCTATGAGAAACACACGAATTAAAGCAAACAATTTTCCTGATTA
AAGAATAACGGCTGTCCAATTCTGAGTCATGAGCGTTTGAGTATTTCTAT
CCTGAGGATGTTGTTTTAAACCGGCCATCAGGTGACTATATTTAGAAGAG
TTAAGACAAGGCAAATGATCTAGTTATAATAATGACACATTTGAATCTTT
GCCTGTGCAAATTAGTATCTCAAACACCTGTATATTTGTGGTGATTATTC
CTCCACACACACCCCCACACCCCCCACCCCCCCACCCCCACTGCCACCCC
AAATCCCCCAGGAAAAGAAAACACACTGTGAAGACACAATGTATCTTAGT
GTATCAATAAGAAAGTGTATTCAGGGAACACATACTAACCAAACTACCAC
AAAATAATATGTAAAAATATGTATTTTGCTCACAAATGCAAGGCTATGTC
TGTGACTCTCACACTGTATTCTCTAGCTAGCGTTTGCCCTCCTCTTTTGA
GGCTTCATGGTGGCCCCTCAGCTAGCCCATGCCTAATGCTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_k09.g1 MSMg01no260_k09.g1 CHROMAT_FILE:
MSMg01no260_k09.g1 PHD_FILE: MSMg01no260_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:48 2005
         (596 letters)



>mm_chr12_54165638_54166635
          Length = 998

 Score = 1009 bits (522), Expect = 0.0
 Identities = 563/594 (94%), Gaps = 28/594 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataatgctctaaaagcacacagagagattaagacgttcattgtaagacttttgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaataatgctctaaaagcacacagagagattaagacgttcattgtaagacttttgtatg 509

                                                                       
Query: 61  gtgcttctggtggtcatgctgaaaagagagcagacattactaaacggagagagcgaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtgcttctggtggtcatgctgaaaagagagcagacattactaaacggagagagcgaagct 449

                                                                       
Query: 121 tcggctatgagaaacacacgaattaaagcaaacaattttcctgattaaagaataacggct 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcggctatgaggaacacacgaattaaagcaaacaattttcctgattaaagaataacggct 389

                                                                       
Query: 181 gtccaattctgagtcatgagcgtttgagtatttctatcctgaggatgttgttttaaaccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtccaattctgagtcatgagcgtttgagtatttctatcctgaggatgttgttttaaaccg 329

                                                                       
Query: 241 gccatcaggtgact--atatttagaagagttaagacaaggcaaatgatctagttataata 298
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gccatcaggtgactttatatttagaagagttaagacaaggcaaatgatctagttataata 269

                                                                       
Query: 299 atgacacatttgaatctttgcctgtgcaaattagtatctcaaacacctgtatatttgtgg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgacacatttgaatctttgcctgtgcaaattagtatctcaaacacctgtatatttgtgg 209

                                                                       
Query: 359 tgattattcctccacacacacccccacaccccccacccccccacccccactgccacccca 418
           ||||||||||                          ||||||||||||||||||||||||
Sbjct: 208 tgattattcc--------------------------ccccccacccccactgccacccca 175

                                                                       
Query: 419 aatcccccaggaaaagaaaacacactgtgaagacacaatgtatcttagtgtatcaataag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aatcccccaggaaaagaaaacacactgtgaagacacaatgtatcttagtgtatcaataag 115

                                                                       
Query: 479 aaagtgtattcagggaacacatactaaccaaactaccacaaaataatatgtaaaaatatg 538
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 114 aaagtatattcagggaacacatactaaccaaactaccgcaaaataatatgtaaaaatatg 55

                                                                 
Query: 539 tattttgctcacaaatgcaaggctatgtctgtgactctcacactgtattctcta 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tattttgctcacaaatgcaaggctatgtctgtgactctcacactgtattctcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 998
Length adjustment: 10
Effective length of query: 586
Effective length of database: 988
Effective search space:   578968
Effective search space used:   578968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |