BAC Information

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BAC

Clone NameMSMg01-261K02
Chromosome12 (Build37)
Map Location 69,892,926 - 69,893,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261K02.T7 (MSMg01no261_k02.b1)MSMg01-261K02.TJ (MSMg01no261_k02.g1)
ACCAG403960AG403961
length750748
length of high quality
(start - end)
353 (48 - 400)349 (75 - 423)
definitionCHROMAT_FILE: MSMg01no261_k02.b1 PHD_FILE: MSMg01no261_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:03 2005CHROMAT_FILE: MSMg01no261_k02.g1 PHD_FILE: MSMg01no261_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGC
GGAATTCTCAACTGATTACCATCAAATGGCCAAGAAGCACCTAAAGAGAT
GTTTATCATCCTTAGTCATCAGGGAAATGCAAATCAAAATGACCCTGAGA
CTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAACTCAGGTGACAA
TAGATGCTGGTGAGAATATGGAGAAAGAGGAACACTCCTCCATTTCTGGT
AGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTC
AGAAAGTTGGACATATTACTACCTGAGGACCCAGATATACCACTCCTGGG
CATATATCCAGAAAATGCTCCAATATGTAATAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTCTTTATAATAGCTAGAAGCTGGAAAGAACCCAGA
TGTCCTTCACCAGAGGAATGGATAACAAAATGGTATGTTTACATAATGCA
GTACTACCCAGCTATTAAAAACGATGACTTCATGAAAGTCACAGGCCAGT
GGATGGATCTAGAAAATTTCATCCTGAGTGAGGTAACTCAATCACAAAAG
AATCCACTTGGCCATGTATTCACTGAACAACGCAAATAGTGTGGAATGCC
TACGGATATAACTCATGGACCACATGAATCCTAAAGAGTATAGGAAGAAC
TAAGTGTTGAATGCCCTCCTTTAAAACGGTTTATCAAAACCTTTCCTTTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGAGTTATTAAGTCTCCCAACTTC
TCCTAAGGGACTCTGTTTTGAGGGCAGGGTACAATTTCAACATTTTAGTG
ATTTCAAAATCTGACTAACCCTCACTTCTTGCTGTGTGCCACCTTTAAGT
CAGCCAGAGGTGAGATATTAGGGTGTTCCTAAGTTAGATGTTTGCCTACT
CTGCGCCCGTAATTAGCCTTCTATAAAATCAGTAGACAGTTTTGCAAAGC
CCCCTATGTACATCTCATTCCCTGAAATTTACCACCAATCCTTTGTTTAA
TATTTGCTTATTCCAATCATGTGATTGTGTGAAACAGATGGACACTGAAC
AACTGCTGCTGACTTTTGTGTCTGATCAATATTCTAGGGTCAAGTTTTGG
CTTACCAAGCGAGTTCTAAGTTAGCTCAACCCCTGCAAAGCGATCTTTTG
TTGAGGATCGGTTCCAATACTCTGACTTATCCCAGCCCCTAAAATTGACA
ATCTGTTGTCCCAATGCTGAATGCCTATGTCTCCAGACGCTCGTTTGCCT
GTTTGCCTGTTTGTCTGTTCCCTCTACCACCATCCCACACACTCCTACGT
TCATGCTCAGTGCCATAATTAACTAGTTTGCCAACTTTTCTTCTACCTTC
TATATCTCTCCTATTCACTTTTTTATCAAACTTATATACCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_k02.g1 MSMg01no261_k02.g1 CHROMAT_FILE:
MSMg01no261_k02.g1 PHD_FILE: MSMg01no261_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:04 2005
         (349 letters)



>mm_chr12_69892726_69893474
          Length = 749

 Score =  667 bits (345), Expect = 0.0
 Identities = 348/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagttattaagtctcccaacttctcctaagggactctgttttgagggcagggtacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgagttattaagtctcccaacttctcctaagggactctgttttgagggcagggtacaa 260

                                                                       
Query: 61  tttcaacattttagtgatttcaaaatctgactaaccctcacttcttgctgtgtgccacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaacattttagtgatttcaaaatctgactaaccctcacttcttgctgtgtgccacct 320

                                                                       
Query: 121 ttaagtcagccagaggtgagatattagggtgttcctaagttagatgtttgcctactctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtcagccagaggtgagatattagggtgttcctaagttagatgtttgcctactctgc 380

                                                                       
Query: 181 gcccgtaattagccttctataaaatcagtagacagttttgcaaagccccctatgtacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccgtaattagccttctataaaatcagtagacagttttgcaaagccccctatgtacatc 440

                                                                       
Query: 241 tcattccctgaaatttaccaccaatcctttgtttaatatttgcttattccaatcatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattccctgaaatttaccaccaatcctttgtttaatatttgcttattccaatcatgtga 500

                                                            
Query: 301 ttgtgtgaaacagatggacactgaacaactgctgctgacttttgtgtct 349
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ttgtgtgaaacagatggacactgaacaattgctgctgacttttgtgtct 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)