BAC Information

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BAC

Clone NameMSMg01-262A16
Chromosome12 (Build37)
Map Location 10,186,873 - 10,340,726
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262A16.T7 (MSMg01no262_a16.b1)MSMg01-262A16.TJ (MSMg01no262_a16.g1)
ACCAG404258AG404259
length692731
length of high quality
(start - end)		365 (44 - 408)488 (72 - 559)
definitionCHROMAT_FILE: MSMg01no262_a16.b1 PHD_FILE: MSMg01no262_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:34 2005CHROMAT_FILE: MSMg01no262_a16.g1 PHD_FILE: MSMg01no262_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,340,365 - 10,340,726)(10,186,873 - 10,187,360)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTATTACAGAGAGAAAGCTTTAGGCTTCAAGTCTATCTTCTTTATG
GGTTCAAAGAATAATATTTTCTGATATTTGTAATATTCAGTCTACAGTGA
GTGACAAATAGATAATTCATTAATACTGGTGTTTTATTAAGAGACTAAAC
CATCTTCTCCTGAATCTAATGCTATGTGAAGATTGATGGAACTTTCAAGA
TAATCCAAGAGATTATATAAACATTTCTATCATCTAAGACTCAGGGGAAA
CATTGAGAATAGCAGTATAAAGATTTTAAGAGTCAGAGGACAAGGGTGCC
TGCTTTAAGATATTGTCTTCTAGAAATGACAGGGAAGTGGTACTCATGAA
GTCACAAGAAACTGGTTCCCTGAGCGATGACCACACCCATTCCCTATGGT
AAGTGTGGGCATTGGGTAATAACCCAACCTAAACCCCAATCCTTTAACCG
TAAAACCTACGGGGTCTCTAATCGGTTTTTTTCTCCCTTCTTCCCCCTTC
CCCTCCTTTCCTCAATAAAACAAACCTCTCCTTTTTTCTTAATCCTCTCT
TATTTTCTTTCAACCTTTTTTTCTTTCTTTTTTCTTAATTTTCCCCTTTT
CAATTTCTACTTTTCCCCTTCTCTATCCCCCTCACCCTCAAN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAATAAGTCTGTCAAATGAAGGGATAT
TGATTTTGGAGTAAGGAATATTATGTCAAACAACATTAGTTTAATTGATC
TGAATTTAGTTTAAGTACTAAAAGCATTTATATACAAACAGCAAATGAAA
ATTAACTGCAGCTGAGCCCCTCTGCTGATTCTCAGGGGCTCTAGCTTTCA
GGGGGGAAACCTGGCACTTGAGAGACCTAGTTACAGACCTGTGCTTGCTC
GCTTGCTTGGAGCTGCTGGTGTTTCTTCCCCAGCACCACAATGAGAGAGG
CAATGTGCTTTGTCTCAAAGTAGGAACATTTAACACTGCCCCTGACTTTT
CAAAATACACAAATGCTGTTTCATGTTCTGAAGGAATTCATTTAAAAAAA
AAAAGGTGTGGGTGAGGCCAGGAACATGTCTGCATCCAAGCTGTAGAAAG
GTCCTGTCCCAAGGTGCACAGAGGAAGACGAGAGACTTTAAAGCAGTGGT
CTCAATCTGTGGGTCACCCCACTGGGGGTTTCCCAGGATCACCTAGTACC
ATTAGAAAACACACACAGTTACATGATAACCGCACCAAAATTACAGCTAT
AACATATCCTTGACCACCATTTTATGGCTCGCTCGCCACACCTTATTAAC
ACCTATATTAACCCGCTGTACCACTACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_a16.b1 MSMg01no262_a16.b1 CHROMAT_FILE:
MSMg01no262_a16.b1 PHD_FILE: MSMg01no262_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:34 2005
         (365 letters)



>mm_chr12_10340290_10341054
          Length = 765

 Score =  669 bits (346), Expect = 0.0
 Identities = 358/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctattacagagagaaagctttaggcttcaagtctatcttctttatgggttca 63
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggaattccctaagagagagagaaagctttaggcttcaagtctatcttctttatgggttca 378

                                                                       
Query: 64  aagaataatattttctgatatttgtaatattcagtctacagtgagtgacaaatagataat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagaataatattttctgatatttgtaatattcagtctacagtgagtgacaaatagataat 318

                                                                       
Query: 124 tcattaatactggtgttttattaagagactaaaccatcttctcctgaatctaatgctatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcattaatactggtgttttattaagagactaaaccatcttctcctgaatctaatgctatg 258

                                                                       
Query: 184 tgaagattgatggaactttcaagataatccaagagattatataaacatttctatcatcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaagattgatggaactttcaagataatccaagagattatataaacatttctatcatcta 198

                                                                       
Query: 244 agactcaggggaaacattgagaatagcagtataaagattttaagagtcagaggacaaggg 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 197 agactcaggggaaacattgagaatagcagtagaaagattttaagagtcagaggacaaggg 138

                                                                       
Query: 304 tgcctgctttaagatattgtcttctagaaatgacagggaagtggtactcatgaagtcaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgcctgctttaagatattgtcttctagaaatgacagggaagtggtactcatgaagtcaca 78

             
Query: 364 ag 365
           ||
Sbjct: 77  ag 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_a16.g1 MSMg01no262_a16.g1 CHROMAT_FILE:
MSMg01no262_a16.g1 PHD_FILE: MSMg01no262_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:35 2005
         (488 letters)



>mm_chr12_10186673_10187560
          Length = 888

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaataagtctgtcaaatgaagggatattgattttggagtaaggaatattatgtcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aagaataagtctgtcaaatgaagggatattgattttggagtaagggatattatgtcaaac 260

                                                                       
Query: 61  aacattagtttaattgatctgaatttagtttaagtactaaaagcatttatatacaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattagtttaattgatctgaatttagtttaagtactaaaagcatttatatacaaacag 320

                                                                       
Query: 121 caaatgaaaattaactgcagctgagcccctctgctgattctcaggggctctagctttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatgaaaattaactgcagctgagcccctctgctgattctcaggggctctagctttcag 380

                                                                       
Query: 181 gggggaaacctggcacttgagagacctagttacagacctgtgcttgctcgcttgcttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggaaacctggcacttgagagacctagttacagacctgtgcttgctcgcttgcttgga 440

                                                                       
Query: 241 gctgctggtgtttcttccccagcaccacaatgagagaggcaatgtgctttgtctcaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgctggtgtttcttccccagcaccacaatgagagaggcaatgtgctttgtctcaaagt 500

                                                                       
Query: 301 aggaacatttaacactgcccctgacttttcaaaatacacaaatgctgtttcatgttctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaacatttaacactgcccctgacttttcaaaatacacaaatgctgtttcatgttctga 560

                                                                       
Query: 361 aggaattcatttaaaaaaaaaaaggtgtgggtgaggccaggaacatgtctgcatccaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaattcatttaaaaaaaaaaaggtgtgggtgaggccaggaacatgtctgcatccaagc 620

                                                                       
Query: 421 tgtagaaaggtcctgtcccaaggtgcacagaggaagacgagagactttaaagcagtggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtagaaaggtcctgtcccaaggtgcacagaggaagacgagagactttaaagcagtggtc 680

                   
Query: 481 tcaatctg 488
           ||||||||
Sbjct: 681 tcaatctg 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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