Query= MSMg01no262_c04.b1 MSMg01no262_c04.b1 CHROMAT_FILE:
MSMg01no262_c04.b1 PHD_FILE: MSMg01no262_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:42 2005
(205 letters)
>mm_chr12_17435232_17435837
Length = 606
Score = 317 bits (164), Expect = 3e-91
Identities = 176/180 (97%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 23 ttaaagacaaacaaaaaatgttgcattttatcaaatgcatatcaaacgtgtattttatca 82
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 ttaaagacaaacaaaaaatgttgcattttatcaaatgcatatcaaacgtgttttttatca 302
Query: 83 cacacata-taaagtgcattatgacctacacctgattagataactcattagggctggctc 141
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacacatattaaagtgcattatgacctacacctgattagataactcattagggctggctc 242
Query: 142 caaagagcttttgggtgctagggagggagagagaaagagggaagaggaagggaaggaggg 201
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 caaagagcttttggatgctagggagggagagagaaagaggggagaggaagggaaggaggg 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 606
Length adjustment: 8
Effective length of query: 197
Effective length of database: 598
Effective search space: 117806
Effective search space used: 117806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_c04.g1 MSMg01no262_c04.g1 CHROMAT_FILE:
MSMg01no262_c04.g1 PHD_FILE: MSMg01no262_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:42 2005
(647 letters)
>mm_chr12_17271376_17272421
Length = 1046
Score = 1135 bits (587), Expect = 0.0
Identities = 634/652 (97%), Gaps = 6/652 (0%)
Strand = Plus / Plus
Query: 1 cattttctacagctgcatacttcagggggaaacacagaaagctgaggcaagcctcagaaa 60
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cattttctacagctgcatatttcagggggaaacacagaaagctgaggaaagcctcagaaa 260
Query: 61 aacaagtagcatttcaccttagggccttccaggagaacacaccggcccaactatgtctct 120
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aacaagtagcatttcacctcagggccttccaggagaacacacc-gcccaactatgtctct 319
Query: 121 ccgcagacctcacacacctctgctctgactccacacatagctctgtgatcactggcacct 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgcagacctcacacacctctgctctgactccacacatagctctgtgatcactggcacct 379
Query: 181 tcctgcaaaggtggagctaaccaaggttccagagggacttcctgtcccaaaataagcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctgcaaaggtggagctaaccaaggttccagagggacttcctgtcccaaaataagcagt 439
Query: 241 gtgcctgctgtggacaggaaagcttgccaatggcttacaagagtcagccttgtggttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgcctgctgtggacaggaaagcttgccaatggcttacaagagtcagccttgtggttctg 499
Query: 301 gtgctccttggagcctcatttgcctgccagtctctccaaaggcactcctagggctccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgctccttggagcctcatttgcctgccagtctctccaaaggcactcctagggctccacc 559
Query: 361 ttccaacagggtaccacctctcctggagccctttgcccaagagagctctggccagggtca 420
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttccaacagggcaccacttctcctggagccctttgcccaagagagctctggccagggtca 619
Query: 421 gggttgttttgtcattcagtaaaaagaagctattattgttgttaaaatttttattagcat 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcgttgttttgtcattcagtaaaaagaagctattattgttgttaaaatttttattagcat 679
Query: 481 ttaaaaattttagacaggatctcatttagtccaggctggccacaaactg----tgtcgcc 536
||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 680 ttaaaaaatttagacaggatctcatgtagtccaggctggccacaaactgactgtgtcgcc 739
Query: 537 aaagctggccttgaacccctaattctcttgcttccttttctttagcgctggcactacagg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaagctggccttgaacccctaattctcttgcttccttttctttagcgctggcactacagg 799
Query: 597 tgtgttactgtcttagctggngttactgtag-tgggatgaaacaccatgacc 647
|||||||||||||||| ||| |||||||||| || |||||||||||||||||
Sbjct: 800 tgtgttactgtcttagttggggttactgtagctgtgatgaaacaccatgacc 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space: 659932
Effective search space used: 659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
