BAC Information

Click to search

BAC

Clone NameMSMg01-262K05
Chromosome12 (Build37)
Map Location 53,872,589 - 53,873,081
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneHectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262K05.T7 (MSMg01no262_k05.b1)MSMg01-262K05.TJ (MSMg01no262_k05.g1)
ACCAG404684AG404685
length727734
length of high quality
(start - end)		497 (43 - 539)595 (73 - 667)
definitionCHROMAT_FILE: MSMg01no262_k05.b1 PHD_FILE: MSMg01no262_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:20 2005CHROMAT_FILE: MSMg01no262_k05.g1 PHD_FILE: MSMg01no262_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTTAAACGGTTGCTCTGCAAACAACATAGGAAGAACGTAAACAGGAG
CTCTGTCAATTATGTCATTGTGTATGGATACTTGGGGTTTGAAGCTCCTG
TTTAAAATGTAAAACCATGGTACACAGTGCGAGCTGTAAAGTATAAATTT
CACTTGGCAAATGCAAAGTTATAGATGAAATGTGACATATTTCGCTGAAT
TTTAAAAGTGTTACCGTTGGAACTTAATCTTTATAAAATGGTAATTAAAG
CTGTTGTAGAATTTAAAGGTAAATAAAGAGAACAATTGCCATGGCTGACT
AGTTACGTGATTATCATAGAAAACAATTACAAGCAGGGGGAAGGTATTTA
AAATGACTTGTTCTAGACCAGCCATGTGGCTAAGAGATCAAGGAGCCTGC
CACCAACCCTGTTGACCTGAGCCATCCCTGGAGCCCACAGTGGGAGGCGG
GAACTGAGTTCCACAAATTGTCCACTGACCTCCACAGGCACTTGGTGGCA
CACACATCCCCGTATACATGTGCATACACAAGTGCGCACGCTCACAAGCA
CCGACACACACACACTCTGACTCTCACTCTCAAATTGATTAATTAATTAA
TTAATTAATAACATGCACTGAGTGTGCGGATCCATTGCCTTGAAAAGTCT
CTGAACAGCCTCCTTTGGCTTGCGACN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAGTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCT
GCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAAT
AACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTT
GATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGCCCATT
TCGTCCAGGTTCTCCAGCTTTGTTGAGTATAGCCTTTTGTATAAAGATCT
GATGCCGCTTAGGATTTCCTTAAAATTAGCTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_k05.b1 MSMg01no262_k05.b1 CHROMAT_FILE:
MSMg01no262_k05.b1 PHD_FILE: MSMg01no262_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:20 2005
         (497 letters)



>mm_chr12_53872510_53873405
          Length = 896

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%), Gaps = 1/494 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatttaaacggttgctctgcaaacaacataggaagaacgtaaacaggagctctg 63
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattccatttaaacggttg-tttgcaaacaacataggaagaacgtaaacaggagctctg 514

                                                                       
Query: 64  tcaattatgtcattgtgtatggatacttggggtttgaagctcctgtttaaaatgtaaaac 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 513 tcaattatgtcattgtgtatggatacttggggtttgaagctcatgtttaaaatgtaaaac 454

                                                                       
Query: 124 catggtacacagtgcgagctgtaaagtataaatttcacttggcaaatgcaaagttataga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catggtacacagtgcgagctgtaaagtataaatttcacttggcaaatgcaaagttataga 394

                                                                       
Query: 184 tgaaatgtgacatatttcgctgaattttaaaagtgttaccgttggaacttaatctttata 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 393 tgaaatgtgacatatttcgctgaatttcaaaagtgttaccgttggaacttaatctttata 334

                                                                       
Query: 244 aaatggtaattaaagctgttgtagaatttaaaggtaaataaagagaacaattgccatggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaatggtaattaaagctgttgtagaatttaaaggtaaataaagagaacaattgccatggc 274

                                                                       
Query: 304 tgactagttacgtgattatcatagaaaacaattacaagcagggggaaggtatttaaaatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgactagttacgtgattatcatagaaaacaattacaagcagggggaaggtatttaaaatg 214

                                                                       
Query: 364 acttgttctagaccagccatgtggctaagagatcaaggagcctgccaccaaccctgttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 acttgttctagaccagccatgtggctaagagatcaaggagcctgccaccaaccctgttga 154

                                                                       
Query: 424 cctgagccatccctggagcccacagtgggaggcgggaactgagttccacaaattgtccac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cctgagccatccctggagcccacagtgggaggcgggaactgagttccacaaattgtccac 94

                         
Query: 484 tgacctccacaggc 497
           ||||||||||||||
Sbjct: 93  tgacctccacaggc 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |