Query= MSMg01no262_k22.b1 MSMg01no262_k22.b1 CHROMAT_FILE:
MSMg01no262_k22.b1 PHD_FILE: MSMg01no262_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:23 2005
(215 letters)
>mm_chr12_41326486_41327101
Length = 616
Score = 339 bits (175), Expect = 1e-97
Identities = 202/211 (95%), Gaps = 1/211 (0%)
Strand = Plus / Minus
Query: 6 ggaattc-cagcagaactacgaaagaaacaggagacccaacagttacagtgcaggctgtg 64
||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 416 ggaattcacagcagaacaaagaaagaaacaggaaacccaacagttacagtgcaggctgtg 357
Query: 65 aaagggaggtctggaggtgacttaacgagtgaggggtaaaaggcatagtggggagggggg 124
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaggcaggtctggagctgacttaacgagtgaggggtaaaaggcatagtggggagggggg 297
Query: 125 tgacagagcatcattgattaagacaacatcagtcttgaacttgagacaacggggctatag 184
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 296 tgacagagcatcattgattaagacaacatcagtcttgaacttgagacaacagggctatgg 237
Query: 185 gagaaaaaggaaataaacaatgagccattta 215
|||| ||||||||||||||||||||||||||
Sbjct: 236 gagagaaaggaaataaacaatgagccattta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 616
Length adjustment: 9
Effective length of query: 206
Effective length of database: 607
Effective search space: 125042
Effective search space used: 125042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no262_k22.g1 MSMg01no262_k22.g1 CHROMAT_FILE:
MSMg01no262_k22.g1 PHD_FILE: MSMg01no262_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:23 2005
(491 letters)
>mm_chr12_41164431_41165321
Length = 891
Score = 888 bits (459), Expect = 0.0
Identities = 483/491 (98%), Gaps = 2/491 (0%)
Strand = Plus / Plus
Query: 1 tctttattcttttgtccatacagaaggaagccaagtaggtggccctcaatcactactcaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tctttattcttttgtccatacagaaggaagccaagtaggtggtcctcaatcactactcaa 260
Query: 61 acaagcccaaatgccatcacaacatgatactgtctctgcgacttagtgcaaacggaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagcccaaatgccatcacaacatgatactgtctctgcgacttagtgcaaacggaatat 320
Query: 121 gtgacagtccctagattgatgggcttttctaataccagggagggacttgtccttgcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgacagtccctagattgatgggcttttctaataccagggagggacttgtccttgcagag 380
Query: 181 ctttgctgacctcccttgttttcttttagtttgaagctggctgtgtaagtgacagaatgc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctttgctgacctcccttgttttcttttagtttggagctggctgtgtaagtgacagaatgc 440
Query: 241 ttgcctagcatgcatgatgctctgggttcagttatcagcaatgcaaaacaaacagactgg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcctagcatgcaggatgctctgggttcagttatcagcaatgcaaaacaaacagactgg 500
Query: 301 tacctcccagggctggggaggcagagtgtccaaattccaggctggccaccctacacactg 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct: 501 tacctcccagggctggggaggcagagtgtccaaattccaggctggcaagcctacatactg 560
Query: 361 agttccatagtgaactctgtcttgaaacaaaaacacctaattaataagtaaaggtata-c 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agttccatagtgaactctgtcttgaaacaaaaacacctaattaataagtaaaggtatagc 620
Query: 420 tccgagttctgaagtagcagcagtgtgagaccagatacgaggtcctctgatctcagtgtc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 -ccgagttctgaagtagcagcagtgtgagaccagatacgaggtcctctgatctcagtgtc 679
Query: 480 tacagaaataa 490
|||||||||||
Sbjct: 680 tacagaaataa 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
