BAC Information

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BAC

Clone NameMSMg01-262L08
Chromosome12 (Build37)
Map Location 113,169,868 - 113,169,996
singlet/doubletsinglet
Overlap genenone
Upstream gene4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
Downstream gene2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262L08.T7 (MSMg01no262_l08.b1)MSMg01-262L08.TJ (MSMg01no262_l08.g1)
ACCAG404735AG404736
length822770
length of high quality
(start - end)
---129 (74 - 202)
definitionCHROMAT_FILE: MSMg01no262_l08.b1 PHD_FILE: MSMg01no262_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:25 2005CHROMAT_FILE: MSMg01no262_l08.g1 PHD_FILE: MSMg01no262_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGCCCGCTCNTCNNCTCCCTNTNTTTCCACNATCCGCGNANTT
CCAAATCTGTTTCCTCTGTGNNNNGNCTTNNTNCTTGCCCNNNTTCCCCN
TGANCCCTGATGNTCTCTANNCCTCCCCGTGTTTTTCCCCAATTGTCNNC
CCCCCCCCNCTCTANCNACTTGCCACCTTGCCCCTGTCTCCNNCCNCTNC
TCCCCCTTGCTCCCCCNGTTCTTGCCTCCCTCNATGCCCTCCACCCCCCC
CCTGCNNNTCCCCCCCCCCCCTCTTTCTTTCTCCCCCCCCCCCCCCCCCT
TCCCCCCCTCCTTCCCCCCCCTTTCTTTCCCTTCCCCCCCCCCCCCCTTT
TNTNTTNCTTTTCCTTCCCCNNCTCCCCCCCCTNCCCCTCTCCCCTTTTT
TTCTCCCCTCTCCCTCCTTTTTTTTCTTCCCCCCCCCCCCCCCTNCCCCC
TTCCTTTCCTCCCTTTTCTCCCCCCTTTCCCCCCCCCTCCCAAAAAATAA
AAAAGAAAAAGACCCTCCTANTCNCTCTCCCNCCNTTTAAAAAAAAGAAA
AAGAAAACTTTTTNTTNNNCCCCCTNNCNCTTTCTCCCCCCCCCTTAATA
TATAATGAAAAAGAAGAAAATGCCCGCTTTNTTTTTTTCTTTCCTCTTCA
CTAAAACAAAAAAGAAGAAAAGTACTAAANNCGTCCCCTGNCTCCCTCTC
TTCCTCTCTTTCTTTCTTCCTCCCTTCCCCTTCCCCTCTTTTATATAAAA
AAAAAAAGAAAGACCTATCCTCCCTTTTCTCTTCTTCCCCCCTTCTCCTT
TCATAATAAAATAGAAAGAAAA
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCGAATACCATGTGGCGCCAACTGCAGGGCACACAG
TTGTGTCCTCCGGATGCCTGCCATGCTGCTCCCTCCCCTTGCTGCCTTAG
AATCTCACCTGTAGCGGTAGCTCCCAGTCTTCCAGAGATCCTGATCTCAG
TTGCGACTAAACCAAAGACCTACTTTACGGCACCTCGCTTGGCTTGCTGC
CTGCCGATGCGTCTCTCCCTGCACCACTGGTCCAGCCTCCTGACCTCCTG
AGACATGACTTCCCTAGCTATTGATCGAGAAGACATATGCCAGGTTCTCT
GAGGTCCTTCCTTACTTCCACTCCTGCACTGTGAGAATCATCTCGACCTT
GAAGGTCCGTACAGGTCTACACACCCCGCTTTAAGATCGATCTGTGTCTG
TAGCCTCTCTGAGATAATGCCTATTGCTACTCTCTTAGGACATTATCATT
GTCCTATGTCTCTTGAACACGTGTATTCTGCGTATAGCACCAATTACGTC
TCTCCCTTTCCTTTTCCACTCCTCCTTCATTATACCGTCTATATGTATCC
TTGTTTTTCCTTGTTCTTCTATTATTATCCCCTTTTATTATCATATATTT
CCTCCTGCCCTCTCGCATTACTTGCATCACCCGCATCTTTAACATAATGT
TGCGGCCCTCACATTTGCTCCTCCGCTCCTCTCTTTCTTCCTTTCTTTTC
TCATTTCATTCATCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_l08.g1 MSMg01no262_l08.g1 CHROMAT_FILE:
MSMg01no262_l08.g1 PHD_FILE: MSMg01no262_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:25 2005
         (129 letters)



>mm_chr12_113169668_113170196
          Length = 529

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtggcgccaactgcagggcacacagttgtgtcctccggatgcctgccatgctgctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgtggcgccaactgcagggcacacagttgtgtcctccggatgcctgccatgctgctccc 270

                                                                       
Query: 61  tccccttgctgccttagaatctcacctgtagcggtagctcccagtcttccagagatcctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 269 tccccttgctgccttagaatctcacctgtagcggtagctcccagtcttccagagatccag 210

                    
Query: 121 atctcagtt 129
           |||||||||
Sbjct: 209 atctcagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)