Query= MSMg01no262_o12.b1 MSMg01no262_o12.b1 CHROMAT_FILE:
MSMg01no262_o12.b1 PHD_FILE: MSMg01no262_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:39 2005
(685 letters)
>mm_chr12_73872254_73873335
Length = 1082
Score = 1203 bits (622), Expect = 0.0
Identities = 665/680 (97%), Gaps = 3/680 (0%)
Strand = Plus / Minus
Query: 5 gaattccaatgtaccacagggatgcagggaaaggaataaaaacttaagatgaaaaaaatt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattccaatgtagcacagggatgcagggaaaggaataaaaacttaagatgaaaaaaatt 777
Query: 65 acatccaactgcctcatatatttgaatagcttcacttcaatgacatggcccaaaggaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 acatccaactgcctcatatatttgaatagcttcacttcaatgacatggcccaaaggaaca 717
Query: 125 ccaagtccccataccattttccctgtctcaggagacgggtctgacattagccaccacgct 184
||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 716 ccaagtccccacaccactttccctgtctcaggagacgggtctgacatcagccaccacgct 657
Query: 185 cagagaggcacttactgtcagagcagtctctatatttaagattcatgaagacgactctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagagaggcacttactgtcagagcagtctctatatttaagattcatgaagacgactctgg 597
Query: 245 ggccagtatttagcacaggataacactgaatagggtacatgtggaggaaatgagtggcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggccagtatttagcacaggataacactgaatagggtacatgtggaggaaatgagtggcag 537
Query: 305 ctgccatcttgactttcccattgtcagcagtgaatctgctctacaaaggaagacactctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctgccatcttgactttcccattgtcagcagtgaatctgctctacaaaggaagacactctc 477
Query: 365 ctggaagctgacctgccagcaaaccatgtcttaccatttccatcctgtttatcctgtaga 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 476 ctggaagctgacctgccagcaaaccatgtcttaccgtttccatcctgtttatcctgtaga 417
Query: 425 atgcatagttcactcagtttcaatgcaacacaaataaataggaaaacattgagctgggca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atgcatagttcactcagtttcaatgcaacacaaataaataggaaaacattgagctgggca 357
Query: 485 tggcagtatgcatatgaagtggggaagatgagtaaggtggcagtaccttctgagaggagt 544
|||||||||||||||||||||||||||||||||| || ||| | |||||||||| ||||
Sbjct: 356 tggcagtatgcatatgaagtggggaagatgagtagggcggcggcaccttctgag--gagt 299
Query: 545 tgtttagagcagcctgggcaacctaataagatccccaccctaggaaaacatcaaactaga 604
|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct: 298 tgtttagagcagcctgggcagcctaata-gatccccaccccaggaaaacatcaaactaga 240
Query: 605 gagctatagatgtggtcattaaaaattcttctcatgggctgaagagatggctcacaggtt 664
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 239 gagctatagatgtggtcattaaaaattcttctcatgggctgcagagatggctcacaggtt 180
Query: 665 gagcactgactgctcttcca 684
||||||||||||||||||||
Sbjct: 179 gagcactgactgctcttcca 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1082
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1072
Effective search space: 723600
Effective search space used: 723600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_o12.g1 MSMg01no262_o12.g1 CHROMAT_FILE:
MSMg01no262_o12.g1 PHD_FILE: MSMg01no262_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:40 2005
(580 letters)
>mm_chr12_73821866_73822845
Length = 980
Score = 1050 bits (543), Expect = 0.0
Identities = 570/579 (98%)
Strand = Plus / Plus
Query: 1 agaaagcaattgaagaaagcaaagccaggcaaagaacgggtctgtttcttaggcaaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagcaattgaagaaagcaaagccaggcaaagaacgggtctgtttcttaggcaaatgt 260
Query: 61 aacttttgctgtgttttgagaaccactctacttttaactgaaggaaacaaagtgacagtg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttttgccgtgttttgagaaccactctacttttaactgaaggaaacaaagtgacagtg 320
Query: 121 ttttgttagatatgagccctcggtgactgacacaaaaaggaggacctttgaaaggagggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgttagatatgagccctcggtgactgacacaaaaaggaggacctttgaaaggagggt 380
Query: 181 aatgaagagaattaaagatcaagccatcatcctgagttgtaggaagtgagctgaaaataa 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aatgaagagacttaaagatcaagccatcatcctgagttgtaggaagtgagctaaaaataa 440
Query: 241 gccgcctgcatctagtcctcaagagcccagggccccggccttttgaagtatgaagacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccgcctgcatctagtcctcaagagcccagggccccggccttttgaagtatgaagacaga 500
Query: 301 gttccctacatcgagagcccagaacttctctgattccataccaccctctctggcaagagt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gttccctacatcgagagcccagaacttctctgattccatagcaccctctctggcaagagt 560
Query: 361 tcccgataaacccattcacaatgagatatagaacaacaatgttgcttccaaagaaagcaa 420
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 tcccaataaacccattcacaatgagatataaaacaacaatgttgcttccaaagaaagcaa 620
Query: 421 cccttcttgctcaaatctcatcatgcatgtcaacacactgaacactaagaagccccacag 480
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 621 cccttcttgctcaaatctcatcattcatgtcaacacaccgaacactaagaagccccacag 680
Query: 481 agaagaaatctgtctagttttgttttattccaagggtccaacatatttgacagaggacgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaagaaatctgtctagttttgttttattccaagggtccaacatatttgacagaggacgc 740
Query: 541 ccttctatccccgaatctctattaaagttgggggggggg 579
||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 ccttctatccccgaatctctactaaagttgggggggggg 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
