BAC Information

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BAC

Clone NameMSMg01-263D05
Chromosome12 (Build37)
Map Location 117,653,814 - 117,654,020
singlet/doubletsinglet
Overlap geneNcapg2
Upstream geneIgh, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik
Downstream geneRnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D05.T7 (MSMg01no263_d05.b1)MSMg01-263D05.TJ (MSMg01no263_d05.g1)
ACCAG405089AG405090
length737779
length of high quality
(start - end)
322 (52 - 373)208 (72 - 279)
definitionCHROMAT_FILE: MSMg01no263_d05.b1 PHD_FILE: MSMg01no263_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:03 2005CHROMAT_FILE: MSMg01no263_d05.g1 PHD_FILE: MSMg01no263_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGGCCTTACCTAAACATGATAAAAGCAATCTACAGCA
AACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA
CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGACCCTAATAATTCTACCAGAGAACTCCT
AAACCTGATAAACAGCTTCGTTGAAGTAGCTGCACCCCCAATAAACTCAA
ACAAGTCAATGGCCTTTCTCTATACCCCCAATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCT
TGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCA
AATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC
AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT
TCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAGGAAATTATCTCACATTGCTATGAA
GTCCTTATAAAGGAAAAGAAAGTAACTGAAACTCGTGTGTGCCATTCATT
CACAGGGGGCAGATGTGTGTCGGCTGTGGCGCATCCATCAGGCTTTGTAT
TGCTTTGATTATGATTGGGAGGAAAGTAGAGAAATTAAAGATATGCTACT
TGAGTGCTTCATAAATGTTAATTACATCTAGAAGGAAGAGGTAAGTTATA
GCTGGTATTGGCTAATTTGTGTATTTTTCTTTTTCCTACCTTTCTATCAC
TAGATATTATATTTAGGAACCCCCCCCCCCGCAGAGAAAGCTATAGCTCT
CTGAATCCACCCCCCCCCCTTTTTTTTCTACTTTGAACCCTACTACGACG
AACCACAACCCACCCCCCTATATGAGTATTTTCCATTTCACCACACATTT
ATCTTGCCCCTATCCTTTATACACCCTCTGATAAGTTCCGAGAATTCCCT
ATGGCCCCCTCCTTGCCTTACACTATCTGCAGCCTGGTATAAACCCCACC
TCCTGTTACATCTTGAAAACCATCCTACCGCCTATAGTCCGCTTGGAGTC
TGCTGTTATATCCTTTTCCCAACCGTTATTTACACAAACATAATTCTTTA
TGAAATCTCCCTGTTTCCTTAAACAATAACCTTCCAGATCTTATCGTCTT
TTGGTAAAAAGGTGTCTCTTCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d05.g1 MSMg01no263_d05.g1 CHROMAT_FILE:
MSMg01no263_d05.g1 PHD_FILE: MSMg01no263_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:03 2005
         (208 letters)



>mm_chr12_117653614_117654221
          Length = 608

 Score =  400 bits (207), Expect = e-116
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaggaaattatctcacattgctatgaagtccttataaaggaaaagaaagtaactgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaggaaattatctcacattgctatgaagtccttataaaggaaaagaaagtaactgaaa 260

                                                                       
Query: 61  ctcgtgtgtgccattcattcacagggggcagatgtgtgtcggctgtggcgcatccatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcgtgtgtgccattcattcacagggggcagatgtgtgtcggctgtggcgcatccatcag 320

                                                                       
Query: 121 gctttgtattgctttgattatgattgggaggaaagtagagaaattaaagatatgctactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttgtattgctttgattatgattgggaggaaagtagagaaattaaagatatgctactt 380

                                      
Query: 181 gagtgcttcataaatgttaattacatc 207
           |||||||||||||||||||||||||||
Sbjct: 381 gagtgcttcataaatgttaattacatc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)