BAC Information

Click to search

BAC

Clone NameMSMg01-263H04
Chromosome12 (Build37)
Map Location 115,729,547 - 115,729,753
singlet/doubletsinglet
Overlap geneIgh
Upstream gene4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4
Downstream geneIghv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263H04.T7 (MSMg01no263_h04.b1)MSMg01-263H04.TJ (MSMg01no263_h04.g1)
ACCAG405268AG405269
length753785
length of high quality
(start - end)
557 (68 - 624)205 (76 - 280)
definitionCHROMAT_FILE: MSMg01no263_h04.b1 PHD_FILE: MSMg01no263_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:22 2005CHROMAT_FILE: MSMg01no263_h04.g1 PHD_FILE: MSMg01no263_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCTTCATCTGTTTCAGAGCTACTAAGAGCTGGCTTCCTGAGCTCATCTAG
TGACGAGTATCTCCTAGAGACCTCCGCTAATCGATCTTTTTTCTTTTCTT
TTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTCTTACCTGACCTA
AACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTG
TGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTG
ATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTATCTTAATCACC
TGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACTAGAAAAAATTC
AAGGCCAAACATACCCTGTAAAGCCATTTTCCACTTTACTTCTGATAGAC
TGTCTTGAATTTCCTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAGCT
GTACTCACTGGTACTCTGTTCCCCCAGCTGAAAAGTTCTGAATTCATGCA
GTTGAATCCTTCTCAACAGTCTGCTTTACGGGAACCTTTATTACCGCGAC
CCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTA
ATTTTCGTCCCAGTTTTCTCTTCCCGGTGTTTTCTCGTCCCGTGTTTCGG
CACCAATCTTATTCGCGTTCTCACAACCGGTCAGGATAGATCCTCTCTTC
TGA
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGGGCATGCATATATACTTGTCA
ACAGAAAAAAAAAGAAAATACAGACTCTTAGAGGCTTCTTGTTTTTTGTT
TTAGTCTTTTCAGTCCCTATGAGTTCATGTTAATTGATATTGTGTGTTTT
CTTGTGGTATCCTTGGCTTATTGACTCCAGCAATGTTTCCTTCCAGTATT
TTATACCCACTGATTTTTGTTGAATTATTTTATTCCGTGCCAATCATGTA
TGCTTCTATCATAGTTCTGTGATCTTTCCGTCTTCTGCCTCCAGGGCTCC
TATGCGGTGTCAGAGGTGGTGTCCCTTCTATGACATGGGTCTCCGTTTAG
ACCATTCGTTTATTGGGNACTCTCATGATTTTTCCCCCATCTGTTCGACA
TGACGATTGCAAGGAGGACAAATTGTATGTAGATGGTGGTGGTCTTAGAT
TTGATTGGTTTGTAGAACCATTGCTAAACTATTATTGGGACAGTGTTGAG
CTGGTTTGTTAGAGTTGTTTCTTGAAATTGTTATTGTGACATTATATTAT
TATTTTTATCGAGTTAGTTTCTGGTTTAATCGTTCCCCATTACTGTCTTA
TTGATATTTATTATATCCTTTTCTATTGCTCTGTTTTTTCTCGTCGTCTT
TGTTTTGTAGTTATTATCTAGTTGATTTTTCTGCTTTTCTTTATGAATTC
TGTATTCTTACATGCTTTTTCCTCCTTAGATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_h04.g1 MSMg01no263_h04.g1 CHROMAT_FILE:
MSMg01no263_h04.g1 PHD_FILE: MSMg01no263_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:22 2005
         (205 letters)



>mm_chr12_115729347_115729953
          Length = 607

 Score =  335 bits (173), Expect = 1e-96
 Identities = 198/207 (95%), Gaps = 2/207 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggggcatgcatatatacttgtcaacagaaaaaaaaag--aaaatacagactcttagag 58
           ||||| |||||||||||||||||||||||||||||||||  |||| ||||||||||| ||
Sbjct: 201 ctgggacatgcatatatacttgtcaacagaaaaaaaaagaaaaaaaacagactcttatag 260

                                                                       
Query: 59  gcttcttgttttttgttttagtcttttcagtccctatgagttcatgttaattgatattgt 118
           ||||||||||||||||||||||||||||||||| ||||| || |||||| ||||||||||
Sbjct: 261 gcttcttgttttttgttttagtcttttcagtccgtatgactttatgttagttgatattgt 320

                                                                       
Query: 119 gtgttttcttgtggtatccttggcttattgactccagcaatgtttccttccagtatttta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttttcttgtggtatccttggcttattgactccagcaatgtttccttccagtatttta 380

                                      
Query: 179 tacccactgatttttgttgaattattt 205
           |||||||||||||||||||||||||||
Sbjct: 381 tacccactgatttttgttgaattattt 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 607
Length adjustment: 8
Effective length of query: 197
Effective length of database: 599
Effective search space:   118003
Effective search space used:   118003
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)