Query= MSMg01no263_i17.b1 MSMg01no263_i17.b1 CHROMAT_FILE:
MSMg01no263_i17.b1 PHD_FILE: MSMg01no263_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:29 2005
(575 letters)
>mm_chr12_65746921_65747891
Length = 971
Score = 835 bits (432), Expect = 0.0
Identities = 555/638 (86%), Gaps = 70/638 (10%)
Strand = Plus / Minus
Query: 1 gacagtttagatactaaagggttca-cattagacagatcttccaact-ggaattcagtga 58
||||||||||||||||||||||||| | ||||||| ||||||||| | ||||||||||||
Sbjct: 867 gacagtttagatactaaagggttcatc-ttagacaaatcttccaa-tgggaattcagtga 810
Query: 59 cactctgttttcctagggacttcaacatggaaattgggaaactatgtttagaaggagttc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cactctgttttcctagggacttcaacatggaaattgggaaactatgtttagaaggagttc 750
Query: 119 atgattcaggtaaacaaagccaccagcctcactcacattggcatgattttctgatttcct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atgattcaggtaaacaaagccaccagcctcactcacattggcatgattttctgatttcct 690
Query: 179 aagacttttggaattt-------------------------------------------- 194
|||||| |||||||||
Sbjct: 689 aagactgttggaatttcaggacatatgttgtcatatgtaatagaaatatgacaacggaaa 630
Query: 195 ----------------tcccagcagccatattctttgttgatgccctatgtaactcaatg 238
||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 629 taggagagagcccctttcccagcagtcatattctttgtcgatgccctatgtaactcaatg 570
Query: 239 aggtttttatgttatagtgaatcattgatactgacatggggataaccccgagtttggttc 298
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 569 aggtttttatgttatagtgaatcattgatactgacatggggagaaccccgagttt----- 515
Query: 299 atatcatttacctctataaaactgatttctgtctcaccggttctgggtggccccattata 358
|||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct: 514 atatcatttacctctataaaactgatttctgtctcaccagttctgggtggcactattaca 455
Query: 359 ttacagtcatgttaaaataaagattgaaatttttacaaggtttttt-ctggcgacaaaaa 417
||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct: 454 ttacagtcatgttaaaataaagattgaaattttaacaaggtttttttctggcaacaaaaa 395
Query: 418 aaaagttgttcttaactttggtcaataaaacttctttgtgcagtgggcattaatcagtca 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatagttgttcttaactttggtcaataaaacttctttgtgcagtgggcattaatcagtca 335
Query: 478 gtggagagatggatatgccaacacgtgaagaagaagagactgagtactcagccctacaca 537
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtggagagatggatacgccaacacgtgaagaagaagagactgagtactcagccctacaca 275
Query: 538 gaactatattccctcatccaaggcttaagaaatatgga 575
||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaactatattccctcatccaaggcttaagaaatatgga 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 971
Length adjustment: 10
Effective length of query: 565
Effective length of database: 961
Effective search space: 542965
Effective search space used: 542965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_i17.g1 MSMg01no263_i17.g1 CHROMAT_FILE:
MSMg01no263_i17.g1 PHD_FILE: MSMg01no263_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:29 2005
(649 letters)
>mm_chr12_65587234_65588282
Length = 1049
Score = 1239 bits (641), Expect = 0.0
Identities = 647/649 (99%)
Strand = Plus / Plus
Query: 1 agaaagaaaatgtaaaaaggaactaaaagctcaatgaggagacttggtgagtcagaggaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagaaaatgtaaaaaggatctaaaagctcaatgaggagacttggtgagtcagaggaa 260
Query: 61 tacaaatactgaaaattataaacaagggactaggagagggaattatgatttaaggaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaaatactgaaaattataaacaagggactaggagagggaattatgatttaaggaggac 320
Query: 121 aactacagtgctacctgcttatgaggaaatcaagaatacactttgagggaaattgaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactacagtgctacctgcttatgaggaaatcaagaatacactttgagggaaattgaagtg 380
Query: 181 ttaatttgaataattagacattgagatagccaaaagtgtcgcctccgattctgaccagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatttgaataattagacattgagatagccaaaagtgtcgcctccgattctgaccagca 440
Query: 241 gaaaagagcgacaacactacgttcttctcaaagcagtttattcaggaacctttcaatatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagagcgacaacactacgttcttctcaaagcagtttattcaggaacctttcaatatc 500
Query: 301 atgcatgaatctctctccagaaatcaatctctccaggaaaaaacaacaacccaaccctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcatgaatctctctccagaaatcaatctctccaggaaaaaacaacaacccaaccctcc 560
Query: 361 cccaattgcaatcccttatataacttctcaaccacgccccattagcccagtccatgtaac 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 cccaattgcaatcccttatataacttctcaaccacgccccatcagcccagtccatgtaac 620
Query: 421 agcagtccattggccagaatcatcactcgtcatatggtccaatcttgcatcatggtgcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcagtccattggccagaatcatcactcgtcatatggtccaatcttgcatcatggtgcac 680
Query: 481 ctgcacagttctcacgatggaagcgacttattttcaggtgtatgaggaagtcaggtgcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcacagttctcacgatggaagcgacttattttcaggtgtatgaggaagtcaggtgcaa 740
Query: 541 gtcataagacttggctacaatcccgggtgccatcttgggactgctgccacacccgctcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcataagacttggctacaatcccgggtgccatcttgggactgctgccacacccgctcct 800
Query: 601 cacacaaaggcaattgactgagtatggtgctccctcaactcagactgaa 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cacacaaaggcaattgactgagtatggtgctccctcaactcagactgaa 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
