BAC Information

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BAC

Clone NameMSMg01-263M16
Chromosome12 (Build37)
Map Location 50,389,423 - 50,389,734
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
Downstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263M16.T7 (MSMg01no263_m16.b1)MSMg01-263M16.TJ (MSMg01no263_m16.g1)
ACCAG405517AG405518
length743757
length of high quality
(start - end)
320 (44 - 363)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no263_m16.b1 PHD_FILE: MSMg01no263_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:48 2005CHROMAT_FILE: MSMg01no263_m16.g1 PHD_FILE: MSMg01no263_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTATCACCATTATTTGAAATTTAAAGTCTTTCTCATAATGAACATA
GCTAAAGACATAAAAGACAAATGATAGAGAAATTAAAAGCAATTATCAAA
GGAATTCTCTTCAGAAATTTCTGATTTAAATTAAAGCCTGTGATTAAAAA
AAATCTCCTTAGTCTTTGTCCTTCTCCATTCTTCTAATAGTTCAGTACTG
CACCAGCACCTTATGACTTAATTTCTTCTTCAAAGACAATCATTCTATGT
TTGAAATGTACATATCAGCTTCATATACTATTTCTATACGCACTAATGAA
TAACTTTTAGATATTAAGCAGCACACCGCTCGAAAAGGAACCATAGAAAG
TGAAAATTTCCTCCTACAACTGTTAATTTTAATTTTGCGTATGGAAAAGG
GGTTGCCTCAGATATTGTTACTTCAAATGTAGCATGGTATATTTCAGTGA
TCAGGGCTAGGGCATGTCCCCTTATTTTCATAGGTTCTGCTTTTCTTTTT
CCAACAGCATACTTCTTGCAAGTCTCTGCACAGATACTGCAATGGATAAT
GGGTTCCTAACAGGTAAGTTAAGAGGGTTGGTGATCAGGTGTAAGGTCTT
TATTATCTTCTTTTTACAACTAAAATTATTTTTTGACTTTAACTTCTATA
TCCTATTCTTATTTATATAATCTCACATATTTCTTATTTATGT
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTGAGCTGGATCTCACTTTGG
TCATGTCACTGGACCTTCTTTTCCCCAGGCTCTTCTCCATTTCTATCCCT
ACAGTTCTTTTAGAGAGGAAAAATTATGGGTCAGAGTTTTGACTATGGGA
TGGCAACCCCCTCATAACTTGAGGCCCTGACTTTCTGCCTCAGGTGGGCT
CTATAAGTTCTGTCTCCCAACTATGGAGCATTTCATATAAGGTCTCTCCC
TTTGAGTCCCTCACCTCCCAGTTCTCTGGTGCTTTGCAGAGGGTTCCCCC
AACCTCCTACCTCTTTATTTTGCCCGCCCACCTTCTTTCTGCTGCCCCTC
AGGGCTTCAGTCCTTTTCCCTCACCCAATACAACATCTGGTTCCTCTCTT
TCCCCACCCTACTCCATCCACTTTCCCTCCCAGGTCCCTCCCTCCCTCCC
GACTTGTGATTGCTTTCTTCTCTCTCCCAAGTGCGACTGATGTGTTTCCA
TTGTTCCCTTTATTTTGTTGATCTTTTTTTCCCCTGTTTACCCCTTTTCG
CTTACTTTTGTTTGCCCCCCTTTTTTTCTTTTTTCCCCCTTTTTCCCCCC
CTTTTCTTTTCCCCTTCTTTTCCCCATTTTTTTTCTCCGCCCTTTTTTTC
CTTTTATCCCCTTCCCCTTTCCTTTTCCCCTTTACCTTTTTTTTACTTTC
CCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_m16.b1 MSMg01no263_m16.b1 CHROMAT_FILE:
MSMg01no263_m16.b1 PHD_FILE: MSMg01no263_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:48 2005
         (320 letters)



>mm_chr12_50389219_50389934
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 311/316 (98%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtatcaccattatttgaaatttaaagtctttctcataatgaacatagctaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcagtatcaccattatttgaaatttaaagtctttctcataatgaacatagctaaag 457

                                                                       
Query: 65  acataaaagacaaatgatagagaaattaaaagcaattatcaaaggaattctcttcagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acataaaagacaaatgatagagaaattaaaagcaattatcaaaggaattctcttcagaaa 397

                                                                       
Query: 125 tttctgatttaaattaaagcctgtgattaaaaaaaatctccttagtctttgtccttctcc 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 tttctgatttaaattaaagcctgtgatt-aaaaaaatctccttagtctttgtccttctcc 338

                                                                       
Query: 185 attcttctaatagttcagtactgcaccagcaccttatgacttaatttcttcttcaaagac 244
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 337 attcttctaatagttcagtactgcaccagcaccttatgacttaat---ttcttcaaagac 281

                                                                       
Query: 245 aatcattctatgtttgaaatgtacatatcagcttcatatactatttctatacgcactaat 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 aatcattctatgtttgaaatgtacatatcagcttcatatactgtttctatacgcactaat 221

                           
Query: 305 gaataacttttagata 320
           ||||||||||||||||
Sbjct: 220 gaataacttttagata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 716
Length adjustment: 9
Effective length of query: 311
Effective length of database: 707
Effective search space:   219877
Effective search space used:   219877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)