BAC Information

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BAC

Clone NameMSMg01-264A10
Chromosome12 (Build37)
Map Location 9,175,104 - 9,175,373
singlet/doubletsinglet
Overlap genenone
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A10.T7 (MSMg01no264_a10.b1)MSMg01-264A10.TJ (MSMg01no264_a10.g1)
ACCAG405687AG405688
length732924
length of high quality
(start - end)
267 (386 - 652)276 (124 - 399)
definitionCHROMAT_FILE: MSMg01no264_a10.b1 PHD_FILE: MSMg01no264_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:06 2005CHROMAT_FILE: MSMg01no264_a10.g1 PHD_FILE: MSMg01no264_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGATGCGCGG
AATTCTATCAGATTTCTAAAGAAGACCTAATTCCAACTCTCCTCAAACTA
TTCCACAAAATAGAAGGAGAAGCCACTCTACACAATTCATTCTATGAAGC
CACAATTACTCTGATACTTAAACCACAGAAAGACCCAACAAAGATAGAGT
ACTTCAGACCAATTTCCTTTATAAATATCGGTGCAAAAATACTCAATAAA
ATCCTCGAAAACTGAATCCAAAACCATATCAAAATGGTCATCCATCATGA
CCAAGTAGCCTTCATCCTTTTATTGTGGGGATGATTTAATATACAGAAAT
CCATCAATGATTTCTTTTATACCCCCCCACTCCCAGACAAAAACCACATG
ATCATCTCGTTAGATGCACAGAAAGCATTTGACAAAATCCAACACCCATT
CATGATAAAAGCCTTGGAAAGTTCAGGAATTCAAGGCCCATACCTAAACA
TAATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAACTAAATGGT
GAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCT
GTTTTTCACTACCTATTCAACATAGTACTTGAAGTCATAGCCAGAGCAAT
TCGACTACAAAAAGAGGTCCAGGAGATACAAATTGGAAAGGAAAAAGTCA
AAATATCACTATTTGCAGATGATATGATAGTA
TCCCCTCTCTNCTTTTNCTTTTTATTTTTATATACCCCCCNNNNTTCACT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTGGTTCCCTACACCAGTACAAAT
CAGAGCCCTTGCTGTTCTTCACCGGCATCCTTGCCTCTCATTCCCTCTTT
CCAGGAAGGAAGAGGATATAAGGTTACTTTCTATGATGATGCCAACAAAC
ATCCAACATTTGCACTGTCCAGTGTCCCAGTTACCAGCCACATGTGGCTA
TCAAGCACTTGAATGTGTCTCATGCCACCAAAGAATGTATGTATGTATAT
ATATATATATATATATATATATATATATATATATATATATATAGGCAGAA
AGATAGATTTTTAGTGAATTTCCAAAAACAAAAACCCCGTTTTTTTTTTT
TTTATTTGTTTTTTGGTTGTTTACTTTTAAAAAAAAAAAAAAAAAATTGG
GTGGTGGGGTGGGGCTGTTTTATTTATTTCTTAAAGACCACTTAATTCTA
CTATTATATAATCTAATCAATTTATATATGTATATAATATAACTAAATAC
TACCTTATAATTTGATTCTTAACATTTTATAATATATACTTAATCAATCT
TTTTTTCTATAATTTATTAATAATATTTTTTTTTATTTTTATTTCTCCTT
ATCATAATTTTATATATAAGATGATCGACAAAAACGTATTTATTTATTAT
TATTTTATATTTTATATAATTTATACAATACATTTATTTCTAACATTAAT
ATTAATTTTTTAAATTTATTAATATTTTGCTAACTTTTAATAACAATTAT
TAATTCCTATTGAATTATAACAGTATTTACATTATTATTACTAATTTTAA
TCATTTTATTATTATTCTTACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a10.g1 MSMg01no264_a10.g1 CHROMAT_FILE:
MSMg01no264_a10.g1 PHD_FILE: MSMg01no264_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:06 2005
         (276 letters)



>mm_chr12_9174904_9175579
          Length = 676

 Score =  491 bits (254), Expect = e-143
 Identities = 266/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctggttccctacaccagtacaaatcagagcccttgctgttcttcaccggcatccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tctctggttccctacaccagtacaaatcagagcccttgctgttcttcactggcatccttg 260

                                                                       
Query: 61  cctctcattccctctttccaggaaggaagaggatataaggttactttctatgatgatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 cctctcattccctctttccaggaaggaagaggatataaggttactttctatgatgatgct 320

                                                                       
Query: 121 aacaaacatccaacatttgcactgtccagtgtcccagttaccagccacatgtggctatca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aacaaacatccaacatttgcactgtccagtgtcccagtcaccagccacatgtggctatca 380

                                                                       
Query: 181 agcacttgaatgtgtctcatgccaccaaagaatgtatgtatgtatatatatatatatata 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agcacttgaatgtgtctcatgccaccaaagaatgtatgtatatatatatatatatatata 440

                                         
Query: 241 tatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 tatatatatatatatatatatatatatata 470



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tatatatatatatatatatatatatatatatatatatatatatatata 419



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tatatatatatatatatatatatatatatatatatatatatatatata 421



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tatatatatatatatatatatatatatatatatatatatatatatata 423



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tatatatatatatatatatatatatatatatatatatatatatatata 425



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tatatatatatatatatatatatatatatatatatatatatatatata 427



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatatatatatatatatatatatatatatatatatatatatatatata 429



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tatatatatatatatatatatatatatatatatatatatatatatata 431



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tatatatatatatatatatatatatatatatatatatatatatatata 433



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatatatatatatatatatatatatatatatatatatatatatatata 435



 Score = 93.5 bits (48), Expect = 1e-23
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 223 tatatatatatatatatatatatatatatatatatatatatatatata 270
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatatatatatatatatatatatatatatatatatatatatatatata 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 60
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 17
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)