BAC Information

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BAC

Clone NameMSMg01-264F07
Chromosome12 (Build37)
Map Location 17,118,263 - 17,301,818
singlet/doubletdoublet
Overlap geneKcnf1, LOC100043299, Pdia6, Atp6v1c2
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514
Downstream geneNol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264F07.T7 (MSMg01no264_f07.b1)MSMg01-264F07.TJ (MSMg01no264_f07.g1)
ACCAG405908AG405909
length742859
length of high quality
(start - end)
314 (46 - 359)125 (126 - 250)
definitionCHROMAT_FILE: MSMg01no264_f07.b1 PHD_FILE: MSMg01no264_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:28 2005CHROMAT_FILE: MSMg01no264_f07.g1 PHD_FILE: MSMg01no264_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,301,509 - 17,301,818)(17,118,263 - 17,118,387)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCACCCCCTTGAGGGACAGGTGATAGCTGCAGAGGCTTTGCCAG
CCTCCCTGCCCCTGAGGGAAGAAGTACTAGCTCGCTTACCATTTGGCTGT
ACCTGGCTCTGGCAGCCCGGGCTCAGAATCTCCCGTGAGCCTGCTCCATT
TCCCATTGTTTGTCTGGATGCTATAGGACACATGGAACTGGCAATTCTCT
CTCTAATAGTCTTATCTGTTGTCCCTCCACCTTCCAGGGGGAACCTCTTC
ACTCGGACACTGAGCGATATTGTCAGCAAGGAAGACTTCGTACTTGATTC
TGAATATCTCATAATTCTCCCGCCCCTCCCCCCCAAGTATGTAGATAGAA
AGGCTGTGGGGTGCCTGGATCTTGATAAAAGAGAGGTGGGCCCCTTGTGA
CATTCTTGCACAGGGCCTGCAGCGGGCCAGCGGCTCCACAGAAGTAGGAG
ATGGCAGCAATTGCAGTACTTCCTGTGTTGTGCCCATAGGAAGAACTTTG
AGCTCTACTGTTCCTTTCACCTGGAGCTAGAAGGCCATTCACCTGGGCCC
AGAAAATTATTAGTGTCCTTCAAAACATACCAATACCTGGGCTGTCCACA
TAGGAACCTTCTGGGAAGTCCTCGGGCCCTTGCACTGGGCTCAGCATGGC
ACCTGGCCACAGCAGGACCTTTTGGGATGTTGGGAACACCCN
GTGTTTTGATTGTANATCCCACATAAAGCAACACTTATTTTTNNNTTTTT
CTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCCACTGCCTCCTCTTGGTGAAC
GAGTGAGGTTCTGATTCTGGTACCCAGACTGTGCTGCAGTCTGTGCACTG
GCTTACATCTTCATCTCGGAGCAGGCAGCTCCAGGGCTAGGACCTGGAGG
TGCTTTGGGAGCTGAAGAGCCTGGTAACGTACTCTACCATTGTTACTAGG
GTCAGTTGTCTTTGAGTGGTAGCTGCTAGCCTTAGCCAAATGTCACAGAA
TCCATTTGTGTGCTTATGTGTTTTTATGTGTGTTTGTGTGTGTGTTCCTG
AGCACACATGTTGAGTAAATTTCCCCCAGGCAGANCCCTGGTTCCTATCT
CTACCTCCTTAATGTTAGCATTGCNGGAGAAAAAAAATAAAACCAGCTGG
AGATTTGAACTCATGTCCTCATGACTGCACAGGCAAGCAGTCTACTGATT
GAGATATACATCAGCCCAGCATTCACATTTTGATGTCACAGCTTAATTCA
AATCTTGGCACTTACATTCTGTCTGCTATATCAACTTCGCCCTTGAACTG
TTTCCTGGTGATAATCTCTTCGGGGTCTCCTATTTTCTTCATTTATTTAA
AATTGTCACTGTATGTATGATGGACACCTTGGATATATTGGTTACATCAG
TATGGCATATATTAGCCTCTGAAATTCCCTTTCCTGCACATCCGGCAATT
ATTTTATATTTGGTGCCCCTCCATATTATTCGTAAATCCTTGAGTCCCCC
TGTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_f07.b1 MSMg01no264_f07.b1 CHROMAT_FILE:
MSMg01no264_f07.b1 PHD_FILE: MSMg01no264_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:28 2005
         (314 letters)



>mm_chr12_17301305_17302018
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcacccccttgagggacaggtgatagctgcagaggctttgccagcctccctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcagcacccccttgagggacaggtgatagctgcagaggctttgccagcctccctgc 455

                                                                       
Query: 65  ccctgagggaagaagtactagctcgcttaccatttggctgtacctggctctggcagcccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccctgagggaagaagtactagctcgcttaccatttggctgtacctggctctggcagcccg 395

                                                                       
Query: 125 ggctcagaatctcccgtgagcctgctccatttcccattgtttgtctggatgctataggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggctcagaatctcccgtgagcctgctccatttcccattgtttgtctggatgctataggac 335

                                                                       
Query: 185 acatggaactggcaattctctctctaatagtcttatctgttgtccctccaccttccaggg 244
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acatggaattggcaatcctctctctaatagtcttatctgttgtccctccaccttccaggg 275

                                                                       
Query: 245 ggaacctcttcactcggacactgagcgatattgtcagcaaggaagacttcgtacttgatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaacctcttcactcggacactgagcgatattgtcagcaaggaagacttcgtacttgatt 215

                     
Query: 305 ctgaatatct 314
           ||||||||||
Sbjct: 214 ctgaatatct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_f07.g1 MSMg01no264_f07.g1 CHROMAT_FILE:
MSMg01no264_f07.g1 PHD_FILE: MSMg01no264_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:28 2005
         (125 letters)



>mm_chr12_17118063_17118587
          Length = 525

 Score =  219 bits (113), Expect = 6e-62
 Identities = 122/125 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacccactgcctcctcttggtgaacgagtgaggttctgattctggtacccagactgtgct 60
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacccactgcctcctctgggcgaacgagtgaggttctgattctggtacccagactgtgct 260

                                                                       
Query: 61  gcagtctgtgcactggcttacatcttcatctcggagcaggcagctccagggctaggacct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtctgtgcacgggcttacatcttcatctcggagcaggcagctccagggctaggacct 320

                
Query: 121 ggagg 125
           |||||
Sbjct: 321 ggagg 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)