BAC Information

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BAC

Clone NameMSMg01-264L18
Chromosome12 (Build37)
Map Location 68,238,972 - 68,309,583
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L18.T7 (MSMg01no264_l18.b1)MSMg01-264L18.TJ (MSMg01no264_l18.g1)
ACCAG406199AG406200
length727754
length of high quality
(start - end)
345 (383 - 727)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no264_l18.b1 PHD_FILE: MSMg01no264_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005CHROMAT_FILE: MSMg01no264_l18.g1 PHD_FILE: MSMg01no264_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,309,237 - 68,309,583)(68,238,972 - 68,239,259)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTCCAACACTGACTGTTCAGCACTTTATCCAAGTGGGATAAGA
TGGATGTTCTATGCACATTGAACATTGTGATCATATTGCCAAGGGGTGTG
CACTACCACCATTTCGTAAACACAAACTGCAAATTAAAATACAATGGAAT
GTGAAAGAACAGAGTTAAAAAGATGAGCTAAATGCATGTTCAGAAAAATG
CACCCATGTTTGAGAGTACTTATAGGATAATGCTTTTGGCCCCTAGGTCT
TGGCCACCTTTAAGTTTATGTACTTCACCAGATCTTAGATGCATGCTCTA
TTTTAGATTTTTCTGAACACCCCCCTTCCCACTGAGGTATAAAATTACAT
GCATAAATCAAGTGTATCTAGGTTACTATTTTTCTTATATATAACTATCA
CATGCTGTTAATAATTAACAAATAAGTGAGTTGAATGTCTATAAAAGCTA
TAATGGACATTTGTAAGCAAAATAAAAAATGAACTATACTACATATCTGA
AAAATAGATTTTTTTGTATGTTCAAAATCTAATGCCTAGGTTTCTTAAAA
ATTGTTCTTAAATTGATCCAGAAACACATCAGTGACTTAAATACTGAGTT
CTTGTCATTCACTTTTCATATGGTTATCTTCCCAGCAAACAATAGAGCAT
TGTAGAGTTTCAACAGTGTAGGGCAAG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTGGGTGCCACTCCTAGATGA
AGAACTCTAGGCAATAAAAGACTGCTGAGAGAGGAGGAAACAGACTTCTC
CAAAGATGAGACTCTGAAATACTTTCAGAAATGCATCTGTATACAGGGAT
TTCTGATTGAATATGATCTAGTGTAGGTGTAAGAACTCTAATTTTACTTA
AGGTATTTTGGTAATCAATAAAAATATCCTATGTAACTATTTTATTATAT
TACACAATAATGTTTAAAATATCTAATTATATGTTATCAATGACCTCTCA
GTGGTGGCTACCTATTTTTTTTCTCAGCCCNAACAGNCCGATATTCAAGG
ATCTTTTAATTTGTGTCACAAATTCTGCTTGTACTGTAAGTACCTGAATT
TGAGGTAATTACTTATACCTGTATTTCATTTTTTCACCTGTACAACGGAG
ATGGTAATATGCAACTCAATAGATGATATAAGAACTAAACAAGAATGCAA
ATACAGGGCTTAGGAAAAACCGAGATGTTAAAGATAGCTTTAAAGTAATT
AAAACCGATATTTGTGTGCATAGGATAAAGCCAGAGGAGATGAGGGCAGT
GTTAAAAAGGAGATGTGATTGACTCTCATAATCAGCACATGTTGAATGTC
TAATAAGCTACTGGCTGACACTCGATTTTTCTTCACTTTGAGGGTCAATC
TCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l18.b1 MSMg01no264_l18.b1 CHROMAT_FILE:
MSMg01no264_l18.b1 PHD_FILE: MSMg01no264_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:00 2005
         (345 letters)



>mm_chr12_68309037_68309783
          Length = 747

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggtataaaattacatgcataaatcaagtgtatctaggttactatttttcttatatat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 547 tgaggtataaaattacatgcataagtcaagtgtatctaggttactatttttcttatatat 488

                                                                       
Query: 61  aactatcacatgctgttaataattaacaaataagtgagttgaatgtctataaaagctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aactatcacatgctgttaataattaacaaataagtgagttgaatgtctataaaagctata 428

                                                                       
Query: 121 atggacatttgtaagcaaaataaaaaatgaactatactacatatctgaaaaataga-ttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 atggacatttgtaagcaaaataaaaaatgaactatactacatatctgaaaaatagaattt 368

                                                                       
Query: 180 ttt-tgtatgttcaaaatctaatgcctaggtttcttaaaaattgttcttaaattgatcca 238
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgtgtgtgttcaaaatctaatgcctaggtttcttaaaaattgttcttaaattgatcca 308

                                                                       
Query: 239 gaaacacatcagtgacttaaatactgagttcttgtcattcacttttcatatggttatctt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaaacacatcagtgacttaaatactgagttcttgtcattcacttttcatatggttatctt 248

                                                          
Query: 299 cccagcaaacaatagagcattgtagagtttcaacagtgtagggcaag 345
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 cccagcaaacattagagcattgtagagtttcaacagtgtagggcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 747
Length adjustment: 9
Effective length of query: 336
Effective length of database: 738
Effective search space:   247968
Effective search space used:   247968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_l18.g1 MSMg01no264_l18.g1 CHROMAT_FILE:
MSMg01no264_l18.g1 PHD_FILE: MSMg01no264_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:00 2005
         (291 letters)



>mm_chr12_68238772_68239462
          Length = 691

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactgggtgccactcctagatgaagaactctaggcaataaaagactgctgagagaggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tcactgggtgccactcctagatgaagaactctaggcaataaaagactgctgagataggag 260

                                                                       
Query: 61  gaaacagacttctccaaagatgagactctgaaatactttcagaaatgcatctgtatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacagacttctccaaagatgagactctgaaatactttcagaaatgcatctgtatacag 320

                                                                       
Query: 121 ggatttctgattgaatatgatctagtgtaggtgtaagaactctaattttacttaaggtat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggatttctgattgaatatgatctagtgtaggtgtaagaactctaattttatttaaggtat 380

                                                                       
Query: 181 tttggtaatcaataaaaatatcctatgtaactattttattatattacacaataatgttta 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tttggtaatcaataaaaatatcctatgtaactattttactatattacacaataatgttta 440

                                                           
Query: 241 aaatatctaattatatgttatcaatgacctctcagtggtggctaccta 288
           |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatatctaaatatatgttatcaatgacctctcagtggtggctaccta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)