BAC Information

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BAC

Clone NameMSMg01-266I01
Chromosome12 (Build37)
Map Location 92,210,997 - 92,211,287
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik
Downstream gene4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266I01.T7 (MSMg01no266_i01.b1)MSMg01-266I01.TJ (MSMg01no266_i01.g1)
ACCAG407474AG407475
length718723
length of high quality
(start - end)
652 (45 - 696)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no266_i01.b1 PHD_FILE: MSMg01no266_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:18 2005CHROMAT_FILE: MSMg01no266_i01.g1 PHD_FILE: MSMg01no266_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCATTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATC
CACTTAGATTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TATTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGGAACAAAA
TTATTAAACATTATCTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCTTTGGTCCCAGAATGCAT
CAGAGCATATTTTTATTGGACAGTTTGGTATTGATAACCATTTATCATGA
ACTCCAAATTGCACAATAATCACTACATTAACATCTGAACTAGCACACAA
TGGCATCTACGGGCTTTGCCTCTTCATCCCAGTCCTTTAAAAAATGATAA
CATGAGAAATAAATTCGCAATCTCTTCACAAAAGGCACGGAAATGGAGAG
AGCTGATCACTGAATCACATTTGCAAGTTCTAATGATGCAGTTGGTCTCA
TCACTCAAGTAAAGCACCTATCCTGCCACCCACCACAGCCCCAGACCTTA
AGAAATGTGCACAACTGAGGCGCCATTCTATCCAGAAGTTGCAATTTCTT
TATCTGTAGGTTAATATTTTCATTTTCTAGTCTTGACAAGACAACAGTTC
CAGAGAGGAATTTATTTAAAGTTTGAAGCCTTAGATTAAAATGAGCCACT
CTTCCAGGGGAACCTCAAAAAGTGGTCTGGGATCACAGTCTGCATAGCAG
AATCTGAAGGGCCTTGGCCAGCCTGGTTTTTCCTTCTTGTTTTGTTTTGA
GATTAAGAGTCACACTGTGTAGCTCTGCCTGGNCTGNAACTCACTAATGG
AGATCAGGCTGGCTTTGAACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_i01.g1 MSMg01no266_i01.g1 CHROMAT_FILE:
MSMg01no266_i01.g1 PHD_FILE: MSMg01no266_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:18 2005
         (291 letters)



>mm_chr12_92210797_92211487
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggctttggtcccagaatgcatcagagcatatttttattggacagtttggtattgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggctttggtcccagaatgcatcagagcatatttttattggacagtttggtattgata 260

                                                                       
Query: 61  accatttatcatgaactccaaattgcacaataatcactacattaacatctgaactagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatttatcatgaactccaaattgcacaataatcactacattaacatctgaactagcac 320

                                                                       
Query: 121 acaatggcatctacgggctttgcctcttcatcccagtcctttaaaaaatgataacatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatggcatctacgggctttgcctcttcatcccagtcctttaaaaaatgataacatgag 380

                                                                       
Query: 181 aaataaattcgcaatctcttcacaaaaggcacggaaatggagagagctgatcactgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaattcgcaatctcttcacaaaaggcacggaaatggagagagctgatcactgaatc 440

                                                              
Query: 241 acatttgcaagttctaatgatgcagttggtctcatcactcaagtaaagcac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatttgcaagttctaatgatgcagttggtctcatcactcaagtaaagcac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)