BAC Information

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BAC

Clone NameMSMg01-267C09
Chromosome12 (Build37)
Map Location 64,913,529 - 64,913,840
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665741, EG382606
Downstream geneLOC435302, EG623046, LOC623123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267C09.T7 (MSMg01no267_c09.b1)MSMg01-267C09.TJ (MSMg01no267_c09.g1)
ACCAG407949AG407950
length735723
length of high quality
(start - end)		316 (45 - 360)643 (76 - 718)
definitionCHROMAT_FILE: MSMg01no267_c09.b1 PHD_FILE: MSMg01no267_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:07 2005CHROMAT_FILE: MSMg01no267_c09.g1 PHD_FILE: MSMg01no267_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCCAGAAGATTCAGTTTTGATTCCTGGCATCGATGTGGCAGCT
CAAATAGCTGAAACTTTATTCCCAGGAGATACATCGTGTTCCTCTGGCCT
TTGTGAGCACAAGGCCCATAACTGGTGGGCAGACACATATTAAGACAAAA
CTCACATACAGATAAACATATTAAAAATGTAATTATTCCTAAATTTAATA
AACATAGAACCTGATTTTTTGATAGTAAAAGTATTAGATACAACCTGGGT
AAAAATATTTAGCTATCTAAAAAATCTCATGAAGCTTGACAAAAGTAATT
GTAAACAGTATAATATATGTGCCCCACCCCCTCTTGCTACCTTTTTTATT
ATGAGTATATTTTGCAAACGTAATTTCAGATTGACAGATGTAATTTTTTA
CTGCTGAATAAGCTCTTTTTTTTTTTTTTTTTAATGTATGGCTGTTTTTT
CACCAGCCGTTTTGGCTCAAAACTCCTCTCTAAGCTGACTGAATCAAACT
TGCTTCTCTTGGATTCATACTGAAATGCACTGTTCAGGAAAATTTCTTCT
GAATTCCACAATCTGAACTGCACTGACTACATGAATTAAATAGAACTGAA
CTGAATTATATGAACTCAACTTCGTTCAAAGGAGCTGCAGCTAACTTCAC
TGAACTGAACTCAGCTGACCTCAACTGCATTGCCT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGGTTCCTGTCGGGCTGCCATAT
GAGTCTGAATCTTTATTTACCTAAATGCTGTCTTGTCTGAGTCTGTGTGA
CCCTACAAAGGTCTTTGCCTTATCTTTTATTGAAAAATACAGAAAGTATC
ATATGGGGAAAGAATGAAGGGCACTTTATAAAAATCTTTAATAAAGTTTT
ACAAGGAGTGAAATCACTAAAACCTACTGGCCCAGATAACGAACCAACAC
AATACTCTCAAGAAATATACACATGGTGCATCCAACATTTGTTGTGGAAG
TTTTTATTTTATAAGGCTGCTTTCATGCTATTTTCCAATTTTAAAAATTT
ATTTCCACAATTAATTTATACACATGAATTATTCATGTACCAAGATATGT
CCTGATGAGCCCTTAGAAATAGTGATAAAGGGAATGACAGCCGAAGTGAT
CAAGAGACTTTGTTTATTGTCTTGCTTGTTCCTGGACTATTATGTTTATT
GTTTTACTTGTTTCTCAACCCAGAACTGACCTTATCACTTGCATGTAATT
TAAATGGTTTAAAGCAGATTAGGAAAAAATAAACCCCAACTCAGCCTCAG
AACAGGCTGGGGTCATGATTCATAAGAGAGAGACAGAGAGACAGAGAGAC
TGAGAGACAGAGAGAGATACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_c09.b1 MSMg01no267_c09.b1 CHROMAT_FILE:
MSMg01no267_c09.b1 PHD_FILE: MSMg01no267_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:07 2005
         (316 letters)



>mm_chr12_64913157_64913872
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttccagaagattcagttttgattcctggcatcgatgtggcagctcaaatagc 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattctcttgcagaagattcagttttgattcctggcatcgatgtggcagctcaaatagc 625

                                                                       
Query: 65  tgaaactttattcccaggagatacatcgtgttcctctggcctttgtgagcacaaggccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaaactttattcccaggagatacatcgtgttcctctggcctttgtgagcacaaggccca 565

                                                                       
Query: 125 taactggtgggcagacacatattaagacaaaactcacatacagataaacatattaaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taactggtgggcagacacatattaagacaaaactcacatacagataaacatattaaaaat 505

                                                                       
Query: 185 gtaattattcctaaatttaataaacatagaacctgattttttgatagtaaaagtattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaattattcctaaatttaataaacatagaacctgattttttgatagtaaaagtattaga 445

                                                                       
Query: 245 tacaacctgggtaaaaatatttagctatctaaaaaatctcatgaagcttgacaaaagtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacaacctgggtaaaaatatttagctatctaaaaaatctcatgaagcttgacaaaagtaa 385

                       
Query: 305 ttgtaaacagta 316
           ||||||||||||
Sbjct: 384 ttgtaaacagta 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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