BAC Information

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BAC

Clone NameMSMg01-268B01
Chromosome12 (Build37)
Map Location 5,036,607 - 5,036,920
singlet/doubletsinglet
Overlap geneAtad2b
Upstream geneC030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4
Downstream geneLOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268B01.T7 (MSMg01no268_b01.b1)MSMg01-268B01.TJ (MSMg01no268_b01.g1)
ACCAG408608AG408609
length694690
length of high quality
(start - end)
320 (46 - 365)299 (76 - 374)
definitionCHROMAT_FILE: MSMg01no268_b01.b1 PHD_FILE: MSMg01no268_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:17 2005CHROMAT_FILE: MSMg01no268_b01.g1 PHD_FILE: MSMg01no268_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGTCTACTTGTTAAGTCGTGGAATCCCAGAGCAAGAAAAACCT
GAACTCTACCCAATCTAGGCCTAGTTCAAGTCTTTATATGTAGCACACTA
TACAAAGGCCAGAAGCTCACTGAAGCAAGTATATTTCTTACTTAGTGTTC
CATACTAGTTAATAAGAGAGAGTGGGTAGGCCCCACTCCAAAACCTAGCT
GGGCAACACACACTAGAATCCATGGTGAAGAGTGGGTCGGGGGCTTGGAC
TCACAGTTGAGTAGTCAGGGAGGGAAAGACAAAGGAGTTGGGTGAGAGGA
GGTTAATATTTCCTTAGTATGTATGAAATTTTCAAGAAATAAAAATATCA
TTGAGAGAAGAGAACATATTCTTATTCTTTGGGAACAAGAAGATGTTCTT
CCTTCTATCACCTCTCCTAATAGCAGCATTTTAGAAAAGTAAGAGAAACC
ACATAAGCACCATGAACATAGAACTTTTAGTTTGGGTGGATACATCTTCA
CAGTATGGAGCACGTGGTAGTTGTACATGTGTATGTGGACCGAATCCTTA
GCATGCCACTTCCTTGTTTACCTAGGACGCTCTATTCAAACACCCATTTT
GTCTGCTAAGCCATCCTGACTGCCCCAGCCTAAAACTTGTTAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCATTTACACCAAATACCTACGA
GTCACTCAAGGTTCCAAGTGCAGCTGTCACCCATCTCAGACAGTGACGCA
CAATGCTTGTGACAGGGGCAGGAACAGACTCTCATTCTGTAGCCCAAGCT
GGCCCTGACTTCACAGTAATCCTCCTGCCTCAGCCTCTCAAGGGCTTGTG
ATCATTTCTCCCACAAATGGAGTGTTGTCTTCTAGAGACTATAAGCTAGG
TGACACTGCATCACAGTGAATGTGAAACAGGTAAGAATCTTTTGTGGGTT
TTTTTTTTTTTTTTTTTTTTTTCCAAGACAGGGTTCTCTGGGTAACCCTG
GCTGGCCTGGAACTCACTCTGTAGACCAGGCTGTCCTTGAACTCAAAAAG
CCGCCTGCCTCTGCCTCCAGAGCGCTGGGATTAAAGGCGTGCGCCACCAC
GCCCAGCCAGGTGAAAATCTTTATCTTCATTGTTAGACATTACATTTTTG
GAGAAAAGGAAATACAACACCACCTTTCTCTATAAATCTTTCCACTCGTT
GAAAATTATTAGTTTAATATGCATGATATTTTGTCTGCGTGTATGTCTAC
GTATAACTGGAGTGCAGTGACCACAGAGGCCAGAAGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_b01.b1 MSMg01no268_b01.b1 CHROMAT_FILE:
MSMg01no268_b01.b1 PHD_FILE: MSMg01no268_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:17 2005
         (320 letters)



>mm_chr12_5036403_5037122
          Length = 720

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagtctacttgttaagtcgtggaatcccagagcaagaaaaacctgaactctac 64
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 518 gaattctcagtctacttgttaagtcatggaattccagagcaagaaaaacctgaactctac 459

                                                                       
Query: 65  ccaatctaggcctagttcaagtctttatatgtagcacactatacaaaggccagaagctca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccaatctaggcctagttcaagtctttatatgtagcacactatacaaaggccagaagctca 399

                                                                       
Query: 125 ctgaagcaagtatatttcttacttagtgttccatactagttaataagagagagtgggtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctgaagcaagtatatttcttacttagtgttccatactagttaataagagagagtgggtag 339

                                                                       
Query: 185 gccccactccaaaacctagctgggcaacacacactagaatccatggtgaagagtgggtcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gccccactccaaaacctagctgggcaacacacactagaatccatggtgaagagtgggtcg 279

                                                                       
Query: 245 ggggcttggactcacagttgagtagtcagggagggaaagacaaaggagttgggtgagagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggggcttggactcacagttgagtagtcagggagggaaagacaaaggagttgggtgagagg 219

                         
Query: 305 aggttaatatttcc 318
           ||||||||||||||
Sbjct: 218 aggttaatatttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)