BAC Information

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BAC

Clone NameMSMg01-268D09
Chromosome12 (Build37)
Map Location 55,373,980 - 55,374,281
singlet/doubletsinglet
Overlap genenone
Upstream geneNpas3, Egln3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D09.T7 (MSMg01no268_d09.b1)MSMg01-268D09.TJ (MSMg01no268_d09.g1)
ACCAG408715AG408716
length715717
length of high quality
(start - end)
314 (45 - 358)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no268_d09.b1 PHD_FILE: MSMg01no268_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005CHROMAT_FILE: MSMg01no268_d09.g1 PHD_FILE: MSMg01no268_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTCTTTTCTTTTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTC
TTTTTTTTTTTTTTGGTATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTA
TAGCCCTGGACGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC
TCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCAGTGGGATTAAAGGCAT
GCGCCACCACGCCCAGCTGGACCTGGAATTCTTTAGCTTTCAAAAGTAAG
GATTTATTTTTTTTACTTTATCTACAGATATCTTTAGCTTATCACCAGCA
CAACTATANCTTATCTCCCATTACTNACTCCCTCAAGAAGAAACATAAAC
CTAGAGATGGTTCAGCACGAAAAAAAAATGACTGCTCTTCCGAAGGTCTT
GAGTTCAAATCCTAGCAACTACATGGTGGTTCACAACCACCCGTAATGAG
ATCTGACACCATCTTCTGGTGCATCTGAAATCAGCTACAGTTTACTTATG
TATAATAATAAATCTTTAAAAAAAATAAACCTATACAGAAACAAATAGTA
GATATAAATAAAGGCAAAATAAGAACTACATGGAAATTGTTAGATAAATA
TAGAATTCAGGAGGCACTGATAATATGTTATGGATTCCCACACAGAGAAT
TTTATCAGGTTAGTG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATATAAACCAGGCTGTCCTCT
GACTCTTTCTGCCGAGTGCTGGTATTAAAAGTACCCACCACACACACATA
GGTCATCAATTATTATTATTATTATTATTATTATTATTATTATATTTGAT
CATTATTTAACAAATTAAGATGGAGAAAAAAGACAGGATGCCTACCCCAT
ATCAGGCATCATGTTCCAGACATACGCCCCAGCCTTGCCCTGACTGAACC
CATGGAGCTGAAAACAGTTTCCTCTCAGTGTGAGAAGGCCTCAGAGGCAC
CACGAGTGTATGGTAGTTTAGCCCCCCACGCCCGACAGGGAATGCACTTG
ACACATGTTTTTCCACTAACACAATTACAATTCAGCTTAGTAGTAACCAC
TTCATAGAGGAAGAGTAAGGCAGCAACTCACTGGAGATTAACCTAAGAGA
CAACTGACAGGCGCTCTCAGCTCAAGGCTAGACACCTTGAGCACTTCAGC
AGATTCTAGCCCTCTCCGCCTGACTCATTTCAGGCACGGAAGGCAATGCC
ACCTGGAAGCTAAACCCTCGAAACACTCTCAAGGTTCCCTGGGGGACAAA
TGTTCTTGGGATGGNCTTCAGCTTTAGAAACTTCTAGAATTAGCTTTGGC
CTTACATCCAGAGGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d09.g1 MSMg01no268_d09.g1 CHROMAT_FILE:
MSMg01no268_d09.g1 PHD_FILE: MSMg01no268_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:27 2005
         (281 letters)



>mm_chr12_55373663_55374343
          Length = 681

 Score =  491 bits (254), Expect = e-143
 Identities = 280/302 (92%), Gaps = 21/302 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatataaaccaggctgtcctctgactctttctgccgagtgctggtattaaaagtaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctatataaaccaggctgtcctctgactctttctgccgagtgctggtattaaaagtaccc 560

                                                                       
Query: 61  accacacacacataggtcatca---------------------attattattattattat 99
           ||||||||||||||||||||||                     |||||||||||||||||
Sbjct: 559 accacacacacataggtcatcaattattattattattattattattattattattattat 500

                                                                       
Query: 100 tattattattattattatatttgatcattatttaacaaattaagatggagaaaaaagaca 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tattattattattattatatttgatcattatttaacaaattaagatggagaaaaaagaca 440

                                                                       
Query: 160 ggatgcctaccccatatcaggcatcatgttccagacatacgccccagccttgccctgact 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggatgcctaccccatatcaggcatcatgttccagacatacgccccagccttgccctgact 380

                                                                       
Query: 220 gaacccatggagctgaaaacagtttcctctcagtgtgagaaggcctcagaggcaccacga 279
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 gaacccatggagctgaaaacagtttccactcagtgtgagaaggcctcagaggcaccacga 320

             
Query: 280 gt 281
           ||
Sbjct: 319 gt 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)