BAC Information

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BAC

Clone NameMSMg01-268I23
Chromosome12 (Build37)
Map Location 62,775,243 - 62,775,521
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268I23.T7 (MSMg01no268_i23.b1)MSMg01-268I23.TJ (MSMg01no268_i23.g1)
ACCAG408942AG408943
length743758
length of high quality
(start - end)
336 (46 - 381)297 (76 - 372)
definitionCHROMAT_FILE: MSMg01no268_i23.b1 PHD_FILE: MSMg01no268_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005CHROMAT_FILE: MSMg01no268_i23.g1 PHD_FILE: MSMg01no268_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGG
ATCAATTCTCATTCTTCTACATGATAACCGCCAGTTGTGCCAGGACCATT
AGTTGAAAATGCTGTCTTTTATCCACTGGGTGGTTTTAGCTCTATGGGGA
CCATTCTTATTCAAACCACCATGTTATTTGTAGAACACTGAAAAAGTTGT
CAATACATACACACACACACACACACACACACACACACACACACACACAG
ACACACACATATATATATGTTATGAACTGCCACACATATGCATTCAGTTA
TTTTTCTCTTATAATAGGTTCTAGTATGCTTATGACATGCACAAACAGTA
AGTATGCTTATAATAGTCTCACTTTTAAAAGTTTATGAATAAATTCTTTG
CTGAAAGCAGTGTGCATATACCTATCTTTTACTAGTTATAAAATAAATTT
AAATGAAACTATAGAAGAGAAAATGACAAAGGCTTGACTTACACATAATT
GAAACACCCTGGATAAGAAATTTTTCTTTTTATAAAACAAAGATCATTTG
TATATTGTTCATGGATTTTTATTACCATTTAATTTTAAGTTCATAAGTGA
CAACTGCAGCAAGGTTGGAACAGGAACAATTGCTTTCAGTTTAATTTCTG
GAANAGAAGTTCAAACCTTAAAGATGGCAGAAGCTGAGGAGTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATTCAAAAAAAAAAAAAAATGTG
TGTTGTGATAGCTAGAGAACCAAAACCTGCCATGCAACAATGTAGATGCC
TGTTGATATCCTGATGGCATCACTGTATCTGATGACTTTTTCTTTTATTC
TATTTTCCTCATGGAAGCATTTCTGTCTGACGACATAAAGAGCTTATCAA
GACCAGAGCACACACTCACTCTAGCTGCATATGTATCAAAAGATGACCTA
GTCGGCCATCACTGGAAAGAGAGGCCCATCAGGCAAACTTTATATGCCCC
AGTACAGGGGAACGCCAGGGTCTTAAAATGGGAATGGCTGGGTAGGGGGA
GTGGGGGNNNNNNNNNNNNNNNCCCCCCCCCCCCAAAAAAAAAAAAAANA
NCNNCCNNGCCNCCCCNCCCCCCCAACCCACACCCCCCCCAACCCCCCCC
NCCACAACACCCACAACACCCAAAACCACAAACNACAACACACAAAAAAC
AAACCCCCCANAAACAAAAAAAAAACCCCCCCCCNACCAAACACACACCC
ACNCCACCCCACACAACCCACACCCCCACACCCCCNAAACCCAANNAAAA
CACACAACACCCACCCACACCAAAAAAACCAACACCAACCCNCCACACCC
CCCAACCACACAACCACACCAACCCCCCCAACACCCACCACAACCAAAAC
CAAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_i23.g1 MSMg01no268_i23.g1 CHROMAT_FILE:
MSMg01no268_i23.g1 PHD_FILE: MSMg01no268_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:52 2005
         (297 letters)



>mm_chr12_62775168_62775864
          Length = 697

 Score =  485 bits (251), Expect = e-141
 Identities = 272/279 (97%)
 Strand = Plus / Minus

                                                                       
Query: 17  aaaaatgtgtgttgtgatagctagagaaccaaaacctgccatgcaacaatgtagatgcct 76
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 354 aaaaatatgtgttgtgatagctagagaaccaaaacctgccatgcaacaacgtagatgcct 295

                                                                       
Query: 77  gttgatatcctgatggcatcactgtatctgatgactttttcttttattctattttcctca 136
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 294 gttgatatcctgatggcatcactatatctgatgactttttcttttattccattttcctca 235

                                                                       
Query: 137 tggaagcatttctgtctgacgacataaagagcttatcaagaccagagcacacactcactc 196
           ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 234 tggaagcatttctgtctgatgatataaagagcttatcaaggccagagcacacactcactc 175

                                                                       
Query: 197 tagctgcatatgtatcaaaagatgacctagtcggccatcactggaaagagaggcccatca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tagctgcatatgtatcaaaagatgacctagtcggccatcactggaaagagaggcccatca 115

                                                  
Query: 257 ggcaaactttatatgccccagtacaggggaacgccaggg 295
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ggcaaactttatatgccccagtacaggggaacgccaggg 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)