Query= MSMg01no268_k17.b1 MSMg01no268_k17.b1 CHROMAT_FILE:
MSMg01no268_k17.b1 PHD_FILE: MSMg01no268_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:59 2005
(325 letters)
>mm_chr12_90955602_90956324
Length = 723
Score = 588 bits (304), Expect = e-172
Identities = 314/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaagaacattagacttttcatagttatttccaggtgggtactagccataatag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaagaacattagacttttcatagttatttccaggtgggtactagccataatag 263
Query: 64 gtgttaaagatacctagaaaaaggtacttttttttttttagaagctaggtatttaagaga 123
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 264 gtgttaaagatacctagaaaaaggtac--ttttttttttagaagctaggtgtttaagaga 321
Query: 124 gaggtattcatgagtatcttagttactttcctattgccatggcaaaacactatgatcatg 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagttattcatgagtatcttagttactttcctattgccatggcaaaacactatgatcatg 381
Query: 184 gcaacttataaaaataagcatttaatctggtctcatggtttagaagagtctatgtgcatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaacttataaaaataagcatttaatctggtctcatggtttagaagagtctatgtgcatc 441
Query: 244 acagagagaagcatggcaacatgctggcatgtcacctgacccacctgtgggagccagaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acagagagaagcatggcaacatgctggcatgtcacctgacccacctgtgggagccagaga 501
Query: 304 gaaatgacatgaattttt 321
||||||||||||||||||
Sbjct: 502 gaaatgacatgaattttt 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 723
Length adjustment: 9
Effective length of query: 316
Effective length of database: 714
Effective search space: 225624
Effective search space used: 225624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_k17.g1 MSMg01no268_k17.g1 CHROMAT_FILE:
MSMg01no268_k17.g1 PHD_FILE: MSMg01no268_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:59 2005
(650 letters)
>mm_chr12_91099043_91100091
Length = 1049
Score = 1212 bits (627), Expect = 0.0
Identities = 644/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Minus
Query: 1 tataaccctttgcctataaccactgcgtccgtgctgcttgaactttaatgtgctattatg 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 849 tataaccctttgcctataaccactgcgtctgtgctgcttgaactttaatgtgctattatg 790
Query: 61 acctaggagtctgaactagacacaggccttcttccagtggatttggatgggatctaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acctaggagtctgaactagacacaggccttcttccagtggatttggatgggatctaatgg 730
Query: 121 atttaatttctttcatcaaaatctcaggggaaggcaaagctggtgatcaacagccataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atttaatttctttcatcaaaatctcaggggaaggcaaagctggtgatcaacagccataat 670
Query: 181 ttgaaaagcagagtattaggatggacaatgtatcccctaggctagttaggaatgctgtat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 669 ttgaaaagcagagtattaggatggacaatgtatcccctaggctagttaggaacgctgtat 610
Query: 241 ccaaagccaactttgactgagttcccagacacctgtatcttaacaccctcctggagagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccaaagccaactttgactgagttcccagacacctgtatcttaacaccctcctggagagtc 550
Query: 301 caatgcatgtatgagctagaaaaatcaatagtgaatgtccagcatttccatatttgtgaa 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 caatgtatgtatgagctagaaaaatcaatagtgaatgtccagcatttccatatttgtgaa 490
Query: 361 atatatgctatgattcttagctgattaaatatgatttttcttaggggagagcttgtgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atatatgctatgattcttagctgattaaatatgatttttcttaggggagagcttgtgtga 430
Query: 421 cttatagaaaaatctcacattatcattgactacaaagttttctggttagacaaaagcttt 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttatagaaaaatctcacatcatcattgactacaaagttttctggttagacaaaagcttt 370
Query: 481 gactgtgaaggtaaccttggtccatggcactgtagtggcttcacaagctgcaatatgcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gactgtgaaggtaaccttggtccatggcactgtagtggcttcacaagctgcaatatgcca 310
Query: 541 tctcaaagagaagtcactgggggatgggggaatgatgtcttcctaatttctcctctccaa 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 309 tctcaaagagaagtcactgggggat-ggggaatgatgtcttcctaatttctcctctccaa 251
Query: 601 aaccggcagtactttttgtgtcttanaatgaatctccctactgtatgccc 650
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 aaccggcagtactttttgtgtcttaaaatgaatctccctactgtatgccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
