BAC Information

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BAC

Clone NameMSMg01-268N16
Chromosome12 (Build37)
Map Location 98,304,863 - 98,305,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268N16.T7 (MSMg01no268_n16.b1)MSMg01-268N16.TJ (MSMg01no268_n16.g1)
ACCAG409145AG409146
length733734
length of high quality
(start - end)
296 (438 - 733)296 (439 - 734)
definitionCHROMAT_FILE: MSMg01no268_n16.b1 PHD_FILE: MSMg01no268_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:12 2005CHROMAT_FILE: MSMg01no268_n16.g1 PHD_FILE: MSMg01no268_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTTTTATGCTTAATACCGAATTCTTTACAGAATGAAATAAAGTT
TTTACTGGAATAAGATTTTCCCTTGTCTGTCTTAATAAGTTCAGGCAATC
CCATGGCATTAAATGCTTGTAGGCAATGATCAATTACGTTTTTTGAAGCT
TCTCCTGTATGCAGAGAAGCAAAAAGAAATCCTGAACAAGTATCAATGCA
GACATGTATATATTTTAGTTTTCCAAATTCTGCATAATGGGTTATATCCA
TTTGCCAAATATGATTAGGTTTAATGCCTCTAGGATTAACTCCTAGATGC
GGCACTGGATAAATAGTATTACCCCCACCACATTGTTTTACGATCATTCT
TGCTTGCTCCTTTGTGATCTTATGACAAAAACAATAAGTATGGCTAGAAA
GATGAAACCTTTCGTGATCACGTTGGGCCAAAGCAACCCGATCTGAAACT
AAGGCTTCTCCTATTAGAGCTCTGTCAATGCGATCATTACCCTCTGCCAG
AGGTCCAGGAAGACCAGAGTGAGACCGTATGTGCCCAATATAAAACGGAT
TTTTCCGGGCGAGAATGATGTTTTGTAATTCTGAAAATAAAGATCCTGAC
GGCGTATTGAAGTTAAACGTACCACAGGTTTCCAGTAAGGGTACTGACTG
AGCAACATATAAACTGTCAGTAAAAATATTAAA
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATTCTCCTTTTTAAAAGGCAC
TTAATGACTGTATCTGGGATATCATGCTCATTGTCTCAGCTATAGAAGGC
TGAGACAGTACTCTTTGGGGCCATTCTGATGTGCCTAGCAAGAACTTAGA
TCTGGGAATGGTATGTTCATATACCATACATATGAGAGAATAATCCTTCC
TTACTTTTGCTATGGTAAATTATGTAAAATACTCTCATTTTTTCTGTTGT
ACATAGGTCATGTTTTTATAATCTATACAAAATTACAAAAATTTAAGGAG
CACCTGTTTCTTTTTAANAATTACCATAACAGCCCCTTAAATGAGTTGTT
TGATATTGTTTCAGCAGAATTCTCTAAGAACAGAAAGATATACTTGTGTC
AAGGAATTCACATATCTTACTAAGACTCTCCCTTACATTTGGAGCATTCA
GTAAGAATGAGCATATAATTTGGGATGTGTTAATAGCCAGAGGAATTCTC
CTTTTGCAATTATAAATGGGTAGGAAGGAAGCTCTTTCTAACCATTTGAA
GTCATAAGTGGGCATGCTATATTAAGGATAATTTGAAGTGCTTGGTATGT
ATCACTCATACATTGTTAAGTATGCTGGTATTTCTTTCTGCTCTGTGAAC
TGTGAGAGACCATGTTGTTGAGCTGTATCAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_n16.g1 MSMg01no268_n16.g1 CHROMAT_FILE:
MSMg01no268_n16.g1 PHD_FILE: MSMg01no268_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:12 2005
         (296 letters)



>mm_chr12_98304663_98305358
          Length = 696

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacttgtgtcaaggaattcacatatcttactaagactctcccttacatttggagcatt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 tatacttgtgtcaaggaattcacatatcttagtaagactctcccttacatttggagcatt 436

                                                                       
Query: 61  cagtaagaatgagcatataatttgggatgtgttaatagccagaggaattctccttttgca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagtaagaatgatcatataatttgggatgtgttaatagccagaggaattctccttttgca 376

                                                                       
Query: 121 attataaatgggtaggaaggaagctctttctaaccatttgaagtcataagtgggcatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attataaatgggtaggaaggaagctctttctaaccatttgaagtcataagtgggcatgct 316

                                                                       
Query: 181 atattaaggataatttgaagtgcttggtatgtatcactcatacattgttaagtatgctgg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atattaaggatattttgaagtgcttggtatgtatcactcatacattgttaagtatgctgg 256

                                                                  
Query: 241 tatttctttctgctctgtgaactgtgagagaccatgttgttgagctgtatcagcc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tatttctttctgctctgtgaactgtgagagaccatgttgttgagctgtatcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)