TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCCCATTCACAAAGATGGACCAGGAAGGGCCTGGAGAGATGGCTCA
GTGGTTAAGAGCACTGGTTGCTCTTCCAGAGGTCAAGGGTTTGATTCCCA
ACTCACAACTATCTATACCTGTATGGGATCCATTTTCCTCTTCTGGAGTG
TAGACAGACATGCAGATAAAACCCATATACACAATATAAATAGATAAACC
TTTTTTAAAAAAAAATAGATGGGGGGAAGCAAGAGGGAGAAAGAGAAGAG
GGGAAAAAGAAAAAAAAAGAAATAAAGTCAATAACTACTTCTTTTTTTTT
AAAAATAGATGGAAGAAGAGAACTATCCCCACACAGTTGTTGTTTGACCC
CCTAGTGTGCACTGTGGCACACACAACCTCACAGGTACACACACCACACA
GATGCATACCAAAACAACAAATTACATTTTTTAAAAGGGAGCCTAAATTA
CTATGTGTGTCTCTCTCAGTGCAGCTAAATTATACAAAAGGGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAAACTTATCTCATAGATGGGACTTG
AAATCTGGTTGTAAAGAGAACAGGCCTTAGGTCTTGAAAAGCAGCCCTGG
CCAGATAAATGACAAAACTGCTTTCCCTACATCCCCAT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTTTCTAGTTTTCAGAAAGAGCAC
GTGTGTGCTCATGCCACTGAGTGCAGGCAGAAGGACATCTGCTGGGAGGG
AGGGAACTCTTCCCCACCACTGTGGGCTCTGGGGACTGAACTCAGACTGT
CAGGTTTATATGGCAAGTGCTTTTCTTAGCTGAGCCTTAAGCTGAGCCCC
AACCTTAAGCCATTTTTTAGAATCTACTTTAAAATGGTTCATCAAGGGCT
AGGGATGTAGTTCAGTATCAAGCATTTGCCTACCATGTGTAAGATATTGG
ATTCAATCCCCACTATTGTACACACACCCCCCCAAAATGGTTAGAGTAAG
AATGTACTCAGGTAGTAGTGGTGCACGTCTTTAATTCCAGCACTCAGGAG
GCAGAGGCAGGAGGATCTCCCAAGTTCAAGCCCAGACTGGTCTACTCAGA
GAGTTCCAGGAAGGCCAGAAACACAGAAAACCCTGTCTCAAAACAAAACA
AAACAAACCATCCAACCAAGAAAAAAAAAAAAAGAATGTATACATACCTA
CCAAAAGAAGTAATTTGTTATTACTATTACTGAGCGTATATGGTAGGCAT
ATGGGTGTTTGTTATAATGTTTAAACGTTTTCACAATACAAATAGAAAAG
CCAAACAATTAGTAACAAAAAN

Query= MSMg01no269_b03.b1 MSMg01no269_b03.b1 CHROMAT_FILE:
MSMg01no269_b03.b1 PHD_FILE: MSMg01no269_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:27 2005
         (581 letters)



>mm_chr12_86828946_86829928
          Length = 983

 Score = 1002 bits (518), Expect = 0.0
 Identities = 551/564 (97%), Gaps = 7/564 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcccattcacaaagatggaccaggaagggcctggagagatggctcagtggtt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gaattccatcccattcataaagatggaccaggaagggcctggagagatggctcagtggtt 861

                                                                       
Query: 65  aagagcactggttgctcttccagaggtcaagggtttgattcccaactcacaactatctat 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aagagcactggctgctcttccagaggtcaagggtttgattcccaactcacaactatctat 801

                                                                       
Query: 125 acctgtatgggatccattttcctcttctggagtgtagacagacatgcagataaaacccat 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 800 acctgtatgggatccattttcctcttctggagtgtagacaaacatgcagataaaacccat 741

                                                                       
Query: 185 atacacaatataaatagataaaccttttttaaaaaaaaatagatggggggaagcaagagg 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 740 atacacaatataaatagataaacctttttt-aaaaaaaatagatggggggaagcaagagg 682

                                                                       
Query: 245 gagaaagagaagaggggaaaaagaaaaaaaaagaaataaagtcaataactacttcttttt 304
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||
Sbjct: 681 gagaaagagaagaggggaaaaagaaaaaaaaagaaataaagttaataactacttc--ttt 624

                                                                       
Query: 305 tttt---aaaaatagatggaagaagagaactatccccacacagttgttgtttgaccccct 361
           ||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttaaaaaaaataaatggaagaagagaactatccccacacagttgttgtttgaccccct 564

                                                                       
Query: 362 agtgtgcactgtggcacacacaacctcacaggtacacacaccacacagatgcataccaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgtgcactgtggcacacacaacctcacaggtacacacaccacacagatgcataccaaa 504

                                                                       
Query: 422 acaacaaattacattttttaaaagggagccta-aattactatgtgtgtctctctcagtgc 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 acaacaaattacattttttaaaagggagcctataattactatgtgtgtctctctcagtgc 444

                                                                       
Query: 481 agctaaattatacaaaaggggagagagagagagagagagagagagagagagagagagaga 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agctaaattatacaaaaggggggagagagagagagagagagagagagagagagagagaga 384

                                   
Query: 541 gagagagagagagagagagagaga 564
           ||||||||||||||||||||||||
Sbjct: 383 gagagagagagagagagagagaga 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 58
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space:   555583
Effective search space used:   555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)