BAC Information

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BAC

Clone NameMSMg01-269O03
Chromosome12 (Build37)
Map Location 10,246,052 - 10,246,553
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269O03.T7 (MSMg01no269_o03.b1)MSMg01-269O03.TJ (MSMg01no269_o03.g1)
ACCAG409874AG409875
length736739
length of high quality
(start - end)
558 (40 - 597)502 (71 - 572)
definitionCHROMAT_FILE: MSMg01no269_o03.b1 PHD_FILE: MSMg01no269_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:25 2005CHROMAT_FILE: MSMg01no269_o03.g1 PHD_FILE: MSMg01no269_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATCCATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATACT
GGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGA
AAGCTTGTACAACCACTCTGGAAATCAGTCTGGCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACCGGTAAGAAGGACGCATGCTCAACTATGTT
CATAGCAACCTTATTTGTAATAGCCAGAAGCTATTAGTAAGATTCTTAAA
TTTGCCTTTTGCCATCTGGTAATCTCTGAGGGCAAGCTCTTAGCCTCTGT
CAGCACTCCTGGGATCCCAACTCTCTCCTGAGTCTCAGTGTTCAGAGCAC
TATCTGCATGCAAGCTCTCCTCTGGCAGGTAAGGTGCACAGAGGTCTGGA
GCTTAGCTCTGCCTTCTGGCTGAAGATGAAGGCCAGAAGGGACCATGTCC
AAGAATCTTTGTTGCTCCTGCAGGCACATGCTCTCCTGCATGGACTGGTC
TCTGAGAGACTTGGGATACAAGATGGTGACCTCAAC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTAGGGGTTTGGTGAGATGGTTAAGCGG
TGAAGGCACACACATGTGACCAAGCCTGGCAACCTCAGTTCAAGCTCAGA
CCTACATGGCAGGAGAAAAACCAGTCCCATAATTTGTCCTCTGAGTTTTT
ACATAGGTCTTGACATTCACCCATGTGCTCTCTCGCTCTCTGTCTCTCTC
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAC
ACACACACACACACACACACACTCACACCATGGAACTGCATGGAACTTGC
TCTGTTTTCTGACTGTTAGCACAATACAGGTGGGGTTTGTAGACTTGTCA
ATTTAGTCTTGGGAAACATAAGAAGGGGCGTGCTATTCTTTACAATGCAA
ATGTAACAAAGGCACTCATAGTTTGTAGAGAGAAAGAATCTTTTTCAAAG
ATTGGATAGCTTGTTATGTGCATAAGTCATTATTGAATCTGAGACTCCCT
CTCCAAACGATGTTAAAATAGTAAAATGGACATGCAAATCGAAAGGTTGT
GTGTGTGTGTGTGTTGCCAGGGCGAATACCATTATCAGACCTTCCCAAGT
CTTAACAAGTTTTGTTTGTCCTGCTTCCATAATCTCCCTCTCGCCGGTTA
TGTCCCTCTTATTAAACCTGTTTACCTTTCCGGTGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_o03.g1 MSMg01no269_o03.g1 CHROMAT_FILE:
MSMg01no269_o03.g1 PHD_FILE: MSMg01no269_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:26 2005
         (502 letters)



>mm_chr12_10245852_10246753
          Length = 902

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaggggtttggtgagatggttaagcggtgaaggcacacacatgtgaccaagcctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaggggtttggtgagatggttaagcggtgaaggcacacacatgtgaccaagcctggc 260

                                                                       
Query: 61  aacctcagttcaagctcagacctacatggcaggagaaaaaccagtcccataatttgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacctcagttcaagctcagacctacatggcaggagaaaaaccagtcccataatttgtcct 320

                                                                       
Query: 121 ctgagtttttacataggtcttgacattcacccatgtgctctctcgctctctgtctctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagtttttacataggtcttgacattcacccatgtgctctctcgctctctgtctctctc 380

                                                                       
Query: 181 tttctctctctctctctctctctctctctctcacacacacacacacacacacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctctctctctctctctctctctctctcacacacacacacacacacacacacacac 440

                                                                       
Query: 241 acacacacacactcacaccatggaactgcatggaacttgctctgttttctgactgttagc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacacacacacaccatggaactgcatggaacttgctctgttttctgactgttagc 500

                                                                       
Query: 301 acaatacaggtggggtttgtagacttgtcaatttagtcttgggaaacataagaaggggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatacaggtggggtttgtagacttgtcaatttagtcttgggaaacataagaaggggcg 560

                                                                       
Query: 361 tgctattctttacaatgcaaatgtaacaaaggcactcatagtttgtagagagaaagaatc 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctattctttaaaatgcaaatgtaacaaaggcactcatagtttgtagagagaaagaatc 620

                                                                       
Query: 421 tttttcaaagattggatagcttgttatgtgcataagtcattattgaatctgagactccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttcaaagattggatagcttgttatgtgcataagtcattattgaatctgagactccct 680

                                 
Query: 481 ctccaaacgatgttaaaatagt 502
           ||||||||||||||||||||||
Sbjct: 681 ctccaaacgatgttaaaatagt 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)