TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCCTGTCGTGGTTCATTCAAAACGGTTAAACTCGAGAAAAAAAAAT
GTTTAACAGTTTCAGTAAAATCCGCCTTCTGAAAAAAGAAAGCAGAAGTT
AAGAACTTCACTAGCATATGCTTATTTTCATCGCTTATTATTTCCCATCC
GTCTTTCTGAAGTGTGGGAGGCCACTAAGGGACAATAGAAATTGGATTTT
ATCTTTGAGATTTGAAGGTGATCTCGGCCATCTCACAGAAACCGGGCTGA
GCTGCCTTCTGCTTGGGAACACTTCGGAGTTTAGTTGCGCTAAATAGAAT
TTCCTTATCTTGGGCTCTTTTTTGTTTTGTTTTGTTTTCAATCAAGGTTT
AAAAGGGTTTCAGAGCTGAGCTTCTAAACACAAGGTGAAAGTCATTATTG
AGGCTCCCCTCCCAGGAAGGCGCTGCACTCACTACCCAAAGGCCTTTCGG
TGCTACTGTTTACTCCGTGGCGTGGCGGATCCCACGGCCCCTGGAGCTTT
CCACTTGGGTCAGTTGGAAGCCTTTTCCCTCCTCGCTGCCCCCGCTTCCG
GCCCCTCCCCCATCCCGAGCAAAATTCAGAAAAAAAAAAAAAACCACCCT
CAGCTCTGGCCATTTACTGAGCCCTAGGCGCCCACTTTCTGGAGGATGAA
GCAACAGTGAAAAAAACAGGACCCGGGG

ATTAATAGTAAAACCAGGTTTTAAAAAACCACATAACAAACAACAATAAA
CGAACCCCACAACCTAAACCACCACCACAAGATTTCTTATTTTAATACAA
AATCAAAAACAAATAATAATTATAAGCCCACCACAACAAAAAAACCATCA
AACACAAATTGTTCAAATCCCAATAAAACACCAATCGCCCATACTAGACC
TCCAACACAAATAAAAACACTTAAACATAAAAACCATCGCAAACAATAAA
ATAACAAACAATCCCACACAAGAAATNNNNNNNNNNNNNNNNNNCCCTGC
CAATGACAGNTGGGGTGAGTCTTGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTTAGCATCTCTTNG
GATCAGAGCTGCCAACAGGGAATNTGGTTGAAGTCATCAAGGGCCTGTAG
GGCCACAAGCCCGAAAACATTTCTGGGATCCGGCAACCACCNGAGGAGTC
AATCCCCAAAACAGGAAGGAAGAAGAGTTCATACGGGAGGGCCCAAATCG
TTCGANGGTTCTAAGGTATT

Query= MSMg01no270_b02.b1 MSMg01no270_b02.b1 CHROMAT_FILE:
MSMg01no270_b02.b1 PHD_FILE: MSMg01no270_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:39 2005
         (686 letters)



>mm_chr12_58638808_58639901
          Length = 1094

 Score = 1266 bits (655), Expect = 0.0
 Identities = 680/691 (98%), Gaps = 8/691 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcctgtcgtggttcattcaaaacggttaaactcgagaaaaaaaaa-tgttt 62
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattctctcctgtcgtggttcattcaaaacggttaaactcgagaaaaaaaaaatgttt 263

                                                                       
Query: 63  aacagtttcagtaaaatccgccttctgaaaaaagaaagcagaagttaagaacttcactag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacagtttcagtaaaatccgccttctgaaaaaagaaagcagaagttaagaacttcactag 323

                                                                       
Query: 123 catatgcttattttcatcgcttattatttcccatccgtctttctgaagtgtgggaggcca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catatgcttattttcatcgcttattatttcccatccgtctttctgaagtgtgggaggcca 383

                                                                       
Query: 183 ctaagggacaatagaaattggattttatctttgagatttgaaggtgatctcggcc-atct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ctaagggacaatagaaattggattttatctttgagatttgaaggtgatctcggccgatct 443

                                                                       
Query: 242 cacagaaaccgggctgagctgccttctgcttgggaacacttcggagttt--agttgcgct 299
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 444 cacagaaaccgggctgagctgccttctgcttgggaacacttcggagtttttagttgcgct 503

                                                                       
Query: 300 aaatagaatttccttatcttgggctcttttttgttttgttttgttttcaatcaaggttta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaatagaatttccttatcttgggctcttttttgttttgttttgttttcaatcaaggttta 563

                                                                       
Query: 360 aaagggtttcagagctgagcttctaaacacaaggtgaaagtcattattgaggctcccctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagggtttcagagctgagcttctaaacacaaggtgaaagtcattattgaggctcccctc 623

                                                                       
Query: 420 ccaggaaggcgctgcactcactacccaaaggcctttcggtgctactgtttactccgtggc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccaggaaggcgctgcactcactacccaaaggcctttcggtgctactgtttactccgtggc 683

                                                                       
Query: 480 gtggcggatcccacggcccctggagctttccacttgggtcagttggaagccttttccctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtggcggatcccacggcccctggagctttccacttgggtcagttggaagccttttccctc 743

                                                                       
Query: 540 ctcgctgcccccgcttccggcccctcccccatcccgagcaaaattcagaaaaaaaaaaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 ctcgctgcccccgcttccggcccctcccccatcccgagcaaaattcaaaaaaaaaaaaaa 803

                                                                       
Query: 600 aa----ccaccctcagctctggccatttactgagccctaggcgcccactttctggaggat 655
           ||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 aaaaaaccaccctcagctctggccatttactgagccctgggcgcccactttctggaggat 863

                                          
Query: 656 gaagcaacagtgaaaaaaacaggacccgggg 686
           |||||||||||||| ||||||||||||||||
Sbjct: 864 gaagcaacagtgaagaaaacaggacccgggg 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1094
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1084
Effective search space:   732784
Effective search space used:   732784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)