BAC Information

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BAC

Clone NameMSMg01-270G24
Chromosome12 (Build37)
Map Location 37,421,882 - 37,422,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270G24.T7 (MSMg01no270_g24.b1)MSMg01-270G24.TJ (MSMg01no270_g24.g1)
ACCAG410274AG410275
length721764
length of high quality
(start - end)		319 (44 - 362)290 (435 - 724)
definitionCHROMAT_FILE: MSMg01no270_g24.b1 PHD_FILE: MSMg01no270_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:05 2005CHROMAT_FILE: MSMg01no270_g24.g1 PHD_FILE: MSMg01no270_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTGTTGGCTTTACTGAATGGAGGTATGCAGGACTCTATGGTAAAA
GAATTCTATTCAAAGACATTTCCGCCTGTTTGTTTTTTGGACCAGTTACT
GTTCGCATAAGTCTGGAAAGGAGCCAAATTATGTAAACAAATTAAACTTT
GAGGATCCCAGTGGGAATATCCAGAGGTACTGCCATAAACCAGCAACTTA
AGACAAACTGAACATGCATGTTATAATTGCCAGAGAAAGCTAGAGAGTAG
TGGTTCCTAGTTATGGTTGGGAATCTTAATGCATATTAAGAGATTTGTGT
TAATTATGCAGTTANATGATCACCACCAACCCTAAACCTGTGTGTTTTGC
TAAGTAAGTTTTTATTTTGATTTCCTAAAAAATTCATATCAGACAAAAAT
TATTTCTGAAGCTATAGTTTATACACTCAGTCTACTAAAATGTGTAATAT
GTAATTTTATATAATTATTAAAAACTAACAATTTCTGTTTCCTTGGCCTT
TACAAAGATGAGGATCAGGACTTTAAGGATGAGCAAAGATGTCTAAAGAA
GCTCCGTGGGAAGGGGAAACTGAGAAAAGGAGAAGGGAAAAGAGCTACAA
AAAAGAAATAGCATGAGCTCATCAAGAAAGAAAATGCCTTCCTCAGTGAC
TAAGAAAGTGTATCTCATTAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGACGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCTACACCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACACTGAGATTCCACTTCACTCCAGTCAGAATGCCTAAGATCAAAAAC
TCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAAGGGAACACTCCT
CCATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCGTAGGATCCCGCAATA
CCTCTCCTGTTTTTTATATCCACACCACGCCCCAACCGGTAAGAAGAACA
CATGCTCCACTATGTTCATAGCAGCCTTATATATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAATACTACTCAGCTATTAAAAAAAATGAATTTATGA
AATTCCTAGGCAAATGGATGGATCTGGTGGGTATCATCCTGAGTGAAGTA
ACGCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAAC
GCATGAAATTCAAGAAGAACGAAGACCAAAGTGTGGACACTCTACCCTTT
CTTAGAAATGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_g24.b1 MSMg01no270_g24.b1 CHROMAT_FILE:
MSMg01no270_g24.b1 PHD_FILE: MSMg01no270_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:05 2005
         (319 letters)



>mm_chr12_37421679_37422397
          Length = 719

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttgttggctttactgaatggaggtatgcaggactctatggtaaaagaattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttgttggctttactgaatggaggtatgcaggactctatggtaaaagaattc 263

                                                                       
Query: 64  tattcaaagacatttccgcctgtttgttttttggaccagttactgttcgcataagtctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattcaaagacatttccgcctgtttgttttttggaccagttactgttcgcataagtctgg 323

                                                                       
Query: 124 aaaggagccaaattatgtaaacaaattaaactttgaggatcccagtgggaatatccagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaggagccaaattatgtaaacaaattaaactttgaggatcccagtgggaatatccagag 383

                                                                       
Query: 184 gtactgccataaaccagcaacttaagacaaactgaacatgcatgttataattgccagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtactgccataaaccagcaacttaagacaaactgaacatgcatgttataattgccagaga 443

                                                                       
Query: 244 aagctagagagtagtggttcctagttatggttgggaatcttaatgcatattaagagattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagctagagagtagtggttcctagttatggttgggaatcttaatgcatattaagagattt 503

                           
Query: 304 gtgttaattatgcagt 319
           ||||||||||||||||
Sbjct: 504 gtgttaattatgcagt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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