BAC Information

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BAC

Clone NameMSMg01-270O11
Chromosome12 (Build37)
Map Location 27,371,516 - 27,526,983
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270O11.T7 (MSMg01no270_o11.b1)MSMg01-270O11.TJ (MSMg01no270_o11.g1)
ACCAG410607AG410608
length718741
length of high quality
(start - end)		625 (42 - 666)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no270_o11.b1 PHD_FILE: MSMg01no270_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:40 2005CHROMAT_FILE: MSMg01no270_o11.g1 PHD_FILE: MSMg01no270_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,371,516 - 27,372,136)(27,526,470 - 27,526,983)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATCATTCCATGTAAGATCTGATGAGATAGCTCTGTGGATAAACTATGA
GGACCTGAGTTCAGATCTCTACAAGCCAGACAAACATGGTGATCCACTTG
AAATCCTACCAGTCTTGAACAACAGCAGGCAATTCTCAGAACAAGGAAGT
CGGCTATACTACCAAATTGGGCAGCTCTAGATTTAGGGAGAGACCCTAGT
TGATAGAGTGAAAAGTTATGTTAGACTTTTTGTCACAGCTCAAGAGAAGT
AACTAGTACATTCCTGTAAGCTGTAGTTATAAATCACATTGCAGCCTATT
TTTACATATGTAGAGCTATTATATCTTGTATGTGGTTTTTTTTCTCAATT
AGTATATGGGAAGCCCTTCCATATCCACCTGGCCTATCTCATATTTTTAA
GAAGGCCAGGATATTTTACACTGTGAATGGACAAAGTTTATCTATATGCT
CATTGTTAGAGAGTATTCAAGCTTTAGTCTTTAACTTGACAAAGCCAGGA
GTCACCTGAGAATGAAATCTCAATTGAGGGTTTGCCCAGTTGAGAATGTC
CTATGGACATGCTTATGCCACAATTGTCTCCAATGCTGTTTAATGTAGGA
GAGCCCAGTTCACTGTGGGTAGCACAATTCCCCAGGAAGGCGCTCCTTGG
TTGTATAAGAAGCTAGGT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTCAAAGATTGGGAATAATGA
AGTATATCTACTGACACTATGTCTATAAAACACTGTCTTAGTGGTCTTAG
TTAGCTAAGTGAACCAAATAAATAAATAAAAGGCATGAATATTGGAAAGA
GAAAAAGTACAAAATTGAAAACTGTCATTTTTCATAGATGGTGTGATTAG
CTAGAGAATGATCACAAGAACCTACAAACATGTTAGAGAAACAATGGCAA
GTTTATCAAGATTTGAGAACAGTGCTAACATCTACCAATTAATGATAATT
CTATGTGCTTGTTTTAAAATTAGAAAATGAAATAAAAAGTAGCATCAGTA
AAATACCACCCAAAAACTTATCACATATAAAACGGGGCAAATTCATTCAA
AATCTACATGCTGAGAGCACTGGGGAAATATGAACCCAAGCACGTCACAG
CCCTGAAGTATCTGCTTGAAAAGGTGGTATGTATTAAAACTCCTTAAATA
CTACTATGATAATTATAATTAAATATCATCAAATGCAAGCATTTGATTTC
ATGCCAGAAAGAGGTGTGTTCATTCCACAATGGACCTGGAATAACACAGG
AAGTTAGGAGGAACCACACATGATATCAAATCTGCTCGATAATCCCTGAC
AATCAGCCAATGATACTAAGAATGAGTAAGCATATTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_o11.b1 MSMg01no270_o11.b1 CHROMAT_FILE:
MSMg01no270_o11.b1 PHD_FILE: MSMg01no270_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:40 2005
         (625 letters)



>mm_chr12_27371312_27372336
          Length = 1025

 Score = 1201 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcattccatgtaagatctgatgagatagctctgtggataaactatgaggacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcattccatgtaagatctgatgagatagctctgtggataaactatgaggacc 264

                                                                       
Query: 65  tgagttcagatctctacaagccagacaaacatggtgatccacttgaaatcctaccagtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagttcagatctctacaagccagacaaacatggtgatccacttgaaatcctaccagtct 324

                                                                       
Query: 125 tgaacaacagcaggcaattctcagaacaaggaagtcggctatactaccaaattgggcagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaacaacagcaggcaattctcagaacaaggaagtcggctatactaccaaattgggcagc 384

                                                                       
Query: 185 tctagatttagggagagaccctagttgatagagtgaaaagttatgttagactttttgtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctagatttagggagagaccctagttgatagagtgaaaagttatgttagactttttgtca 444

                                                                       
Query: 245 cagctcaagagaagtaactagtacattcctgtaagctgtagttataaatcacattgcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagctcaagagaagtaactagtacattcctgtaagctgtagttataaatcacattgcagc 504

                                                                       
Query: 305 ctatttttacatatgtagagctattatatcttgtatgtggttttttttctcaattagtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctatttttacatatgtagagctattatatcttgtatgtggttttttttctcaattagtat 564

                                                                       
Query: 365 atgggaagcccttccatatccacctggcctatctcatatttttaagaaggccaggatatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgggaagcccttccatatccacctggcctatctcatatttttaagaaggccaggatatt 624

                                                                       
Query: 425 ttacactgtgaatggacaaagtttatctatatgctcattgttagagagtattcaagcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttacactgtgaatggacaaagtttatctatatgctcattgttagagagtattcaagcttt 684

                                                                       
Query: 485 agtctttaacttgacaaagccaggagtcacctgagaatgaaatctcaattgagggtttgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtctttaacttgacaaagccaggagtcacctgagaatgaaatctcaattgagggtttgc 744

                                                                       
Query: 545 ccagttgagaatgtcctatggacatgcttatgccacaattgtctccaatgctgtttaatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccagttgagaatgtcctatggacatgcttatgccacaattgtctccaatgctgtttaatg 804

                                
Query: 605 taggagagcccagttcactgt 625
           |||||||||||||||||||||
Sbjct: 805 taggagagcccagttcactgt 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_o11.g1 MSMg01no270_o11.g1 CHROMAT_FILE:
MSMg01no270_o11.g1 PHD_FILE: MSMg01no270_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:40 2005
         (667 letters)



>mm_chr12_27525917_27526983
          Length = 1067

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Minus

                                                                        
Query: 153  atttttcatagatggtgtgattagctagagaatgatcacaagaacctacaaacatgttag 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 atttttcatagatggtgtgattagctagagaatgatcacaagaacctacaaacatgttag 1008

                                                                        
Query: 213  agaaacaatggcaagtttatcaagatttgagaacagtgctaacatctaccaattaatgat 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 agaaacaatggcaagtttatcaagatttgagaacagtgctaacatctaccaattaatgat 948

                                                                        
Query: 273  aattctatgtgcttgttttaaaattagaaaatgaaataaaaagtagcatcagtaaaatac 332
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  aattctatgtgcttgcattaaaattagaaaatgaaataaaaagtagcatcagtaaaatac 888

                                                                        
Query: 333  cacccaaaaacttatcacatataaaacggggcaaattcattcaaaatctacatgctgaga 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  cacccaaaaacttatcacatataaaacggggcaaattcattcaaaatctacatgctgaga 828

                                                                        
Query: 393  gcactggggaaatatgaacccaagcacgtcacagccctgaagtatctgcttgaaaaggtg 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  gcactggggaaatatgaacccaagcacgtcacagccctgaagtatctgcttgaaaaggtg 768

                                                                        
Query: 453  gtatgtattaaaactccttaaatactactatgataattataattaaatatcatcaaatgc 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  gtatgtattaaaactccttaaatactactatgataattataattaaatatcatcaaatgc 708

                                                                        
Query: 513  aagcatttgatttcatgccagaaagaggtgtgttcattccacaatggacctggaataaca 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  aagcatttgatttcatgccagaaagaggtgtgttcattccacaatggacctggaataaca 648

                                                                        
Query: 573  caggaagttaggaggaaccacacatgatatcaaatctgctcgataatccctgacaatcag 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  caggaagttaggaggaaccacacatgatatcaaatctgctcgataatccctgacaatcag 588

                                              
Query: 633  ccaatgatactaagaatgagtaagcatattaatc 666
            ||||||||||||||||||||||||||||||||||
Sbjct: 587  ccaatgatactaagaatgagtaagcatattaatc 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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