BAC Information

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BAC

Clone NameMSMg01-271F13
Chromosome12 (Build37)
Map Location 78,353,770 - 78,353,975
singlet/doubletsinglet
Overlap geneFut8
Upstream geneMthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F13.T7 (MSMg01no271_f13.b1)MSMg01-271F13.TJ (MSMg01no271_f13.g1)
ACCAG410926AG410927
length733747
length of high quality
(start - end)
65 (244 - 308)207 (441 - 647)
definitionCHROMAT_FILE: MSMg01no271_f13.b1 PHD_FILE: MSMg01no271_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:12 2005CHROMAT_FILE: MSMg01no271_f13.g1 PHD_FILE: MSMg01no271_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAANCNGAGCGNGGAANNCN
GANTTTACACAAACAGAGCCNGGGNTNNNNNNNNNNTNNNNNNGGGNAGG
AGACNGGGAAGGCCCGNNNNNANNNCNNNAGGGGNNANGGAACGGNNNAG
ANAACCACCGGANCCGGANNNAACNNNGGNACCGGGNANAGGNCNAGAAA
ANCANCCANNCCANCNAGANNNNCCAGNNNGGNNGAGNACTTTTTTTTGT
AGTAGGATATGATAATTTTTAAAATTTCTTTAGTTTCTGTTGTTCTGACT
CCCTTTTCTTTTCTTTTTGAGANAANNAGGANACNGNCNCNGGAGATTTT
GNGTGATTCCCCCAAACGGGCCCCCNANNNNGNNGANNNNNNNNAAGAAN
GGGGNCCCCAAAANNNNAAACNCNCAAAGGGGGGCCGGNCGGGGGCAGNN
NCCNNCNAACGGGAGAACCCCAAANCAGACAGAGAGCCACAGGGGCCCAG
ACCCAGCCAGAGGAGAGCGAAAGCAACCAAAGGCAGGAACAACAAAAAGA
CACCGAGCGAAAAGACAAACGCCGCGNAAAAGACAAACACGGGGGCCAGG
CAAGAAAAGACGACGGGACGCAACCGAAAACCCACAGCGATTTTTTTTTT
TTGTAACCGCGAGCCAAAAAGACCGGTGACTTTTCCCTATCGGCCCTATA
TTATAAGGACTAAATAGACCGTAGTTTATTTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTCTTTTTTTCCTCCTTCTAATTTTGTAGTCT
TCTAGTTCCTTTTATCCAAGATAGCAATTCCCCTGTTCATTTATAGGGTT
AACTTGTTGCATTTGACTTATACAGTTTTGTTTTCTCTAAAAAATGTGTG
TGATCCTGCATGGGTGTGTGTGCACCACATGCATGTGTGCAGGAGCTCTC
AGTGGCCAAAAGTTTGTATTGGATCCCCTGGAACTAGACTTAGAGGTGGT
TGTGAGCTGTCATGTTTTGTTGGGAACTGAACCTTGGTTTTCTGAAAAGT
TTTAGTGNCCTCAATACCAAGNNACCTTTCCAGCCCTCTGGNTCTCCAAT
TAATTCCCTTTGAANTGGTACCTGAAACTTTGCCTTTAGTGAGAACATTA
TTTTTTACTTTATATTGTTATATTGTTAAGCTCCTGAATTCAGTTTCCAT
CCTGGAAGTTTGTCATTCCATCAACCTCAACATGGTTATATTTGAATTTT
CTTTGTTTTGAAATATATTATTCCTCTTAGCTTTCCTTTCTCTATTATTG
ATTTATTCTTGCCATTTTCCAAACTTGAATTCTGAGTCATCTTTGAGTGA
CTCTTATCTTTTCTGAATGAATAAGAATACTAGAGGCATCAGATCGTTTC
TGTTGTGAAACAACGGTGTATTCTATTACTACAGTGTTTTTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f13.g1 MSMg01no271_f13.g1 CHROMAT_FILE:
MSMg01no271_f13.g1 PHD_FILE: MSMg01no271_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:12 2005
         (207 letters)



>mm_chr12_78353570_78354175
          Length = 606

 Score =  377 bits (195), Expect = e-109
 Identities = 204/207 (98%), Gaps = 1/207 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaacattattttttactttatattgttatattgttaagctcctgaattcagtttccat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaacattattttt-actttatattgttatattgttaagctcctgaattcagtttccat 259

                                                                       
Query: 61  cctggaagtttgtcattccatcaacctcaacatggttatatttgaattttctttgttttg 120
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 cctggaagtttgtcattccattaacctcaacatagttatatttgaattttctttgttttg 319

                                                                       
Query: 121 aaatatattattcctcttagctttcctttctctattattgatttattcttgccattttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaatatattattcctcttagctttcctttctctattattgatttattcttgccattttcc 379

                                      
Query: 181 aaacttgaattctgagtcatctttgag 207
           |||||||||||||||||||||||||||
Sbjct: 380 aaacttgaattctgagtcatctttgag 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 606
Length adjustment: 9
Effective length of query: 198
Effective length of database: 597
Effective search space:   118206
Effective search space used:   118206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)