BAC Information

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BAC

Clone NameMSMg01-271G20
Chromosome12 (Build37)
Map Location 76,229,454 - 76,229,768
singlet/doubletsinglet
Overlap geneKcnh5
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271G20.T7 (MSMg01no271_g20.b1)MSMg01-271G20.TJ (MSMg01no271_g20.g1)
ACCAG410984AG410985
length763746
length of high quality
(start - end)		725 (39 - 763)656 (71 - 726)
definitionCHROMAT_FILE: MSMg01no271_g20.b1 PHD_FILE: MSMg01no271_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:18 2005CHROMAT_FILE: MSMg01no271_g20.g1 PHD_FILE: MSMg01no271_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
AGCATGCACCATCACAACCAGCTAGTATTACCTTTAACATCTTAAAACAT
ACTTCTAACCATCTTTGTACTTAATGTTGATTTCTTTGAAACTTCGTGGT
GCTTCAGACAAAGGCTAGAAAACATATTTTTCCTCCATTGTATATGGAAC
ACTCATCAGAATATACCATATTCTGAGACATACCTTTTTTTTTAACCAAT
TTGAACAAATATATACCTTTGAGAATGTATCCTAGACCATAATGGAATCA
AATTAGAACTCAATTACTGAAAGATGCATGGAAAATTCTCCAACAGTTTG
GAAGTTTATTAACACATTTCCACAATAATATATGAGTCAAAAAATCTTAA
GTAAAAATATTCTGAACTGAATCAAAATTTAGCTCTTTCAAATTTATGGA
AGAGAGTAAAGGCAAGACTTAGAGGAAAATATGTAATGTTAAATGTACAT
CTGATGAAAGAAAATGACTTAAAAAAACAACAACCCAGTAACCTAGTTTC
CATCTTAAGAAGCTAGAAAAAGAAGAGAACATTAAACCAAAGCAAGCAGA
GGACAAGATCCTGAACCATACGGGAGAAATCATTGAAAAACTGGACAACA
TTGTAGAAAAACCTATCAAAACTCAAAGCTAACTCTTACAATGAAAGTAT
CATTACAGTTAACCTGCAGCTCTGATAACCAAGAGAAAAGAGGGAAGACA
CAAATTGCCAGTG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAACATGTTCAACATCCTTAATCATCAGGGAAATGCAACTCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGACTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCTGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCTCTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCATCCTTATTTATAATAACCAGAAGCTG
AAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTGTG
AAATTCCTAGGTAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AATGCAATCACAAAGGAACTCACACAATATGCACTCACTGATAAGTGGAT
ATTAGCCCAAAAACTTAGGATACCCAAGATATAAGATACAATTTGTTAAA
TGCATGAAACTCAAGAAGAACGAAGACCANAGTGTGGACACTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_g20.b1 MSMg01no271_g20.b1 CHROMAT_FILE:
MSMg01no271_g20.b1 PHD_FILE: MSMg01no271_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:18 2005
         (725 letters)



>mm_chr12_76229450_76230574
          Length = 1125

 Score =  505 bits (261), Expect = e-147
 Identities = 293/315 (93%), Gaps = 18/315 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaagcatgcaccatcacaaccagctagtattacctttaacatcttaaaacata 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 ggaattccaagcatgcaccatcacaaccagctagtattacctttaaaatcttaaaacata 260

                                                                       
Query: 64  cttctaaccatctttgtacttaatgttgatttctttgaaacttcgtggtgcttcagacaa 123
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259 cttctaaccatctttgtacttaatgttgatttctttgaaactttgtggtgcttcagacaa 200

                                                                       
Query: 124 aggctagaaaacatatttttcctccattgtatatggaacactcatcagaatataccatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aggctagaaaacatatttttcctccattgtatatggaacactcatcagaatataccatat 140

                                                                       
Query: 184 tctgagacatacc------------------tttttttttaaccaatttgaacaaatata 225
           |||||||||||||                  ||||||||| |||||||||||||||||||
Sbjct: 139 tctgagacataccttttttttttttttttttttttttttttaccaatttgaacaaatata 80

                                                                       
Query: 226 tacctttgagaatgtatcctagaccataatggaatcaaattagaactcaattactgaaag 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 79  tacctttgagaatgtatcctagaccataatggaatcaaattagaactcaattactaaaag 20

                          
Query: 286 atgcatggaaaattc 300
           |||||||||||||||
Sbjct: 19  atgcatggaaaattc 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 1125
Length adjustment: 10
Effective length of query: 715
Effective length of database: 1115
Effective search space:   797225
Effective search space used:   797225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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