BAC Information

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BAC

Clone NameMSMg01-271K14
Chromosome12 (Build37)
Map Location 71,167,888 - 71,318,351
singlet/doubletdoublet
Overlap geneNin, ENSMUSG00000056391, Gm804, Pygl
Upstream geneLOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999
Downstream geneTrim9, Txndc1, LOC100040965, LOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271K14.T7 (MSMg01no271_k14.b1)MSMg01-271K14.TJ (MSMg01no271_k14.g1)
ACCAG411150AG411151
length744739
length of high quality
(start - end)		364 (376 - 739)559 (72 - 630)
definitionCHROMAT_FILE: MSMg01no271_k14.b1 PHD_FILE: MSMg01no271_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:35 2005CHROMAT_FILE: MSMg01no271_k14.g1 PHD_FILE: MSMg01no271_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,317,988 - 71,318,351)(71,167,888 - 71,168,446)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACCTCAAATTCCTAAGGGGACAGTCAGATTAATACAACCCTTTGGATT
ATATCCAAGCACTAGATAGATACCTTTTCTGCCTGCTAATTGGTCCTTCT
AGCTCAGATTCTCTGTCATTGGATAATGGAAAATATAATAAGAAAACAGT
CACATCAAGAATGGCATGACAATCACAGAACAAGAGCCTTGAATGTTGGG
GCTGATTTTTTTTCAGTGACTCTATCGTACTCGGACTCTGGGTCTCCATG
AGAGCCCCCTCCCCTCACAGTACAAAGGGTAAAGACAGCAAGGATATTCT
TCCATGTTATCTGCTCCTCACCCAACTTCCTAGTACTCTGGGTGGATCGG
CTGCCATTGCTGCCAAGGCTAATAGCTGTCACTGGTGAAGGAAATAGAAT
GACTACTATTTTGGTCTCGACATAAGTTTCTATTTCTTGGAATGACAGTT
CAGCAGGCAGGACTAGAGAGAGACAGCTTCCCTTAGAAAAGCAGCCACAG
GTTACAGCAGTCAACCTACCCAATGTAGGAAGGTAGCTTCTATATTTGTT
CTTAGACAATGCTAGCATGTACACAGTCACTATTCAAGATGGTGAGGAAA
GGAGTGATATCTATTTTTTAAAGATTTATTTATTTATCATATATAAGTGC
ACTGTAGCTGTCTTCAGACACACCAGAAAAGGGCATGGGATTCC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCACCTCTGTATTCAGAATTAAACCA
TTCATTTGGATATACCTCTGCACACATCTGTACTTTTTTTTAAAAGGGGA
TTTTTAAAAATTATATGTTCATGTGTATCCGTGTCAGATATAAACATGTG
AGGTCTGAAGAAGGGGATCTCCTGGAGTTAGAGCTGCAGCAGCCTGACAT
GGACACTGGGAACTGAAGTGACAGCAGGGTGGGGGGTGCTCTCTGCAAGA
ACAAGTCTCTAACCACTGAGCTTCCGCAGGGATGCACACGACACAGATGG
CAGCTCACCTCAGGGCTGTTCATTCAACACTGCACAAGGTGACCGGCACT
AAAACCGGGGGCTCATAATCTTCATTACTGAACTGTTGTTATTGAATTAT
CTAAGTATTTAAGCTATAGTGCCCACCAAGACAATAGCCTAAAGCAGGCC
TGTGCACATGTGACTGGCTGCAATGTTCGTGGGTATTATTTTTTATAATG
AAAATGGCTTTATGTATCAAAATAAAAATATTCACTCTTCAATAAATTTA
CTTGCTATCTAAAGGCAATTTAAAAAGAGAGGAGGTAGGCAAGGATTTGG
GGGAGTGCCTCCTTCCCTTTATATTCCCATTTCCCCCTTCCACTTTTATT
ACTATTTTTCCCTTCCCCCCATTATTCCCCATTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_k14.b1 MSMg01no271_k14.b1 CHROMAT_FILE:
MSMg01no271_k14.b1 PHD_FILE: MSMg01no271_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:35 2005
         (364 letters)



>mm_chr12_71317864_71318627
          Length = 764

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcctagtactctgggtggatcggctgccattgctgccaaggctaatagctgtcactgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 cttcctagtactctgggtggatcggctgccattgctgccaaggctaatagctatcactgg 429

                                                                       
Query: 61  tgaaggaaatagaatgactactattttggtctcgacataagtttctatttcttggaatga 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 428 tgaaggaaatagaatgactactattttggtctcaacataagtttctatttcttggaatga 369

                                                                       
Query: 121 cagttcagcaggcaggactagagagagacagcttcccttagaaaagcagccacaggttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagttcagcaggcaggactagagagagacagcttcccttagaaaagcagccacaggttac 309

                                                                       
Query: 181 agcagtcaacctacccaatgtaggaaggtagcttctatatttgttcttagacaatgctag 240
           | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 308 aacagtcaacctacccaatgtcggtaggtagcttctatatttgttcttagacaatgctag 249

                                                                       
Query: 241 catgtacacagtcactattcaagatggtgaggaaaggagtgatatctattttttaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catgtacacagtcactattcaagatggtgaggaaaggagtgatatctattttttaaagat 189

                                                                       
Query: 301 ttatttatttatcatatataagtgcactgtagctgtcttcagacacaccagaaaagggca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttgtttatttatcatatataagtgcactgtagctgtcttcagacacaccagaaaagggca 129

               
Query: 361 tggg 364
           ||||
Sbjct: 128 tggg 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_k14.g1 MSMg01no271_k14.g1 CHROMAT_FILE:
MSMg01no271_k14.g1 PHD_FILE: MSMg01no271_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:35 2005
         (559 letters)



>mm_chr12_71167688_71168646
          Length = 959

 Score = 1073 bits (555), Expect = 0.0
 Identities = 558/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccacctctgtattcagaattaaaccattcatttggatatacctctgcacacatctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttccacctctgtattcagaattaaaccattcatttggatatacctctgcaaacatctgt 260

                                                                       
Query: 61  acttttttttaaaaggggatttttaaaaattatatgttcatgtgtatccgtgtcagatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttttttaaaaggggatttttaaaaattatatgttcatgtgtatccgtgtcagatat 320

                                                                       
Query: 121 aaacatgtgaggtctgaagaaggggatctcctggagttagagctgcagcagcctgacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacatgtgaggtctgaagaaggggatctcctggagttagagctgcagcagcctgacatg 380

                                                                       
Query: 181 gacactgggaactgaagtgacagcagggtggggggtgctctctgcaagaacaagtctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacactgggaactgaagtgacagcagggtggggggtgctctctgcaagaacaagtctcta 440

                                                                       
Query: 241 accactgagcttccgcagggatgcacacgacacagatggcagctcacctcagggctgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accactgagcttccgcagggatgcacacgacacagatggcagctcacctcagggctgttc 500

                                                                       
Query: 301 attcaacactgcacaaggtgaccggcactaaaaccgggggctcataatcttcattactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcaacactgcacaaggtgaccggcactaaaaccgggggctcataatcttcattactga 560

                                                                       
Query: 361 actgttgttattgaattatctaagtatttaagctatagtgcccaccaagacaatagccta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgttgttattgaattatctaagtatttaagctatagtgcccaccaagacaatagccta 620

                                                                       
Query: 421 aagcaggcctgtgcacatgtgactggctgcaatgttcgtgggtattattttttataatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaggcctgtgcacatgtgactggctgcaatgttcgtgggtattattttttataatga 680

                                                                       
Query: 481 aaatggctttatgtatcaaaataaaaatattcactcttcaataaatttacttgctatcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatggctttatgtatcaaaataaaaatattcactcttcaataaatttacttgctatcta 740

                              
Query: 541 aaggcaatttaaaaagaga 559
           |||||||||||||||||||
Sbjct: 741 aaggcaatttaaaaagaga 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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