BAC Information

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BAC

Clone NameMSMg01-271O22
Chromosome12 (Build37)
Map Location 74,824,205 - 74,853,740
singlet/doubletdoublet
Overlap genePrkch
Upstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O22.T7 (MSMg01no271_o22.b1)MSMg01-271O22.TJ (MSMg01no271_o22.g1)
ACCAG411349AG411350
length766755
length of high quality
(start - end)		324 (37 - 360)387 (71 - 457)
definitionCHROMAT_FILE: MSMg01no271_o22.b1 PHD_FILE: MSMg01no271_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:55 2005CHROMAT_FILE: MSMg01no271_o22.g1 PHD_FILE: MSMg01no271_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,824,205 - 74,824,524)(74,853,358 - 74,853,740)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCC
TCTGAAACTGTAAGAAAGTCCCCAGTTGAATGCTTTCTACCGAGTCTCTT
CACAGCAACAGAACAGTAAGAGAGGAACTGAAACCCAGCGTTGTGTGCTA
AAATAATCCTTTCTCCACTAAAAAGGATTTAAGGGAGAAATGTGTTTGTT
CATTTTATCACAGCAACAGAGGTGAACCCAGCAATGCACTCGTTCTTCTC
TGGTAATACAGTTCTTGCTGAATTACCCTACACTGTAAAACATAAATCTG
TTTTATGGTACAATCCTAAATACTAAAACAAAGAATTTTCTGTCAGAAAT
TTACTATCTGTTTTTTGCCTGCCTCCACCCTGAGTGCCCCAAAGAGAGAC
TCTTACCACATTAACTTTTAAAGAACAATGACCTCACTACTTGGAATGAC
TTCCATTGTAAATCAAGCTAATTATTATCAGCCCCACAATAACTGAATTG
TATACACGTTCCAAGATCAACACTTTACCTACATTTGCCCCCCGAAATCT
CCTTAACATCATGGTTATCGCCATTGATTAGATAAATAATTCTTAGGGAG
ATGTACTAACCAGGCTGCTAATGGCTAGAGAACTGAGAGCTCAAACCCTG
TCTAACGAATGGTTCTGCTGCCTTCTCTGTTCAGGAGAAACTTGAAAACT
GGAGAGNCGGTATCTTATTCTCCTTATGGTGTAGAGGTAACTCTTAATCG
TGAAAATGAANGCAGA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCCCAAGGGAGAAGAGAGACTATACAAA
GCCTGACACAGAACTTGGGGGGCATGGCATTGGTGATTTTATAATCTCAT
ATTTGGATTAGTCTCAAGCTTGGGTTGGGAGAGGGGAGCAGGGTAGGGGG
AGCAAACCTGAAGAGATCAGTAAGAAAGAGTTTAGGGTGTCAAAAGGAAA
GGAAGTAATGATGGTGAGGGTTACGGTTGGGGTGGTAGGCACAGAGAGCT
GAGTAAGCTTCGAACCCTGTGTACACAGATGAGAAATGGCTTTTGGACCA
GAGAAATATAAGAGTTAAATGCAGAGAGATGGCATAAGGTTCTGACTCAC
AGAATTTGATTTTGGAAATGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG
TTTTACACCCCANAGTATAAATGTTTAATGCCATCCGAATACACATGGGT
AATAGCTGGAGGAAAGAGTTTGCCACTATCTACGATGGAGCGGATGAACT
CAGCCAGAGAGAGGCATGAAGTACGAGAATCTAGGATAGTTCGAATGCAC
TCTTATTGGGGGTGGTGCCTGAGCCTTTTCACTGAGTTCTTCGATTTCGC
GTACGTCCGTTCTTTCCGTTTCCTGCCCCTGCCTTCTTCTTCAGTTTTGC
CCCTTCCGCTGTTGTCCCCTTTTTATCCCTCCCCCCCCTTTTTGCCGTTT
TCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o22.b1 MSMg01no271_o22.b1 CHROMAT_FILE:
MSMg01no271_o22.b1 PHD_FILE: MSMg01no271_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:55 2005
         (324 letters)



>mm_chr12_74824001_74824724
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccctctgaaactgtaagaaagtccccagttgaatgctttctaccgagtctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccctctgaaactgtaagaaagtccccagttgaatgctttctaccgagtctctt 264

                                                                       
Query: 65  cacagcaacagaacagtaagagaggaactgaaacccagcgttgtgtgctaaaataatcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacagcaacagaacagtaagagaggaactgaaacccagcgttgtgtgctaaaataatcct 324

                                                                       
Query: 125 ttctccactaaaaaggatttaagggagaaatgtgtttgttcattttatcacagcaacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctccactaaaaaggatttaagggagaaatgtgtttgttcattttatcacagcaacaga 384

                                                                       
Query: 185 ggtgaacccagcaatgcactcgttcttctctggtaatacagttcttgctgaattacccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgaacccagcaatgcactcgttcttctctggtaatacagttcttgctgaattacccta 444

                                                                       
Query: 245 cactgtaaaacataaatctgttttatggtacaatcctaaatactaaaacaaagaattttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cactgtaaaacataaatctgttttatggtacaatcctaaatactaaaacaaagaattttc 504

                               
Query: 305 tgtcagaaatttactatctg 324
           ||||||||||||||||||||
Sbjct: 505 tgtcagaaatttactatctg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_o22.g1 MSMg01no271_o22.g1 CHROMAT_FILE:
MSMg01no271_o22.g1 PHD_FILE: MSMg01no271_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:56 2005
         (387 letters)



>mm_chr12_74853191_74853977
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcccaagggagaagagagactatacaaagcctgacacagaacttggggggcatggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttgcccaagggagaagagagactatacaaagcctgacacagaacttggggggcatggcat 491

                                                                       
Query: 61  tggtgattttataatctcatatttggattagtctcaagcttgggttgggagaggggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tggtgattttataatctcatatttggattagtctcaagcttgggttgggagaggggagca 431

                                                                       
Query: 121 gggtagggggagcaaacctgaagagatcagtaagaaagagtttagggtgtcaaaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 430 gggtagggggagcaaacctgaagagatcagtaagaaagagtttggggtgtcaaaaggaaa 371

                                                                       
Query: 181 ggaagtaatgatggtgagggttacggttggggtggtaggcacagagagctgagtaagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggaagtaatgatggtgagggttacggttggggtggtaggcacagagagctgagtaagctt 311

                                                                       
Query: 241 cgaaccctgtgtacacagatgagaaatggcttttggaccagagaaatataagagttaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cgaaccctgtgtacacagatgagaaatggcttttggaccagagaaatataagagttaaat 251

                                                                       
Query: 301 gcagagagatggcataaggttctgactcacagaatttgattttggaaatgtgtttgtttg 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 250 gcagagagatggcataaggttctgactcacagaatttgtttttggaaatgtgtttgtttg 191

                                  
Query: 361 tttgtttgtttgtttgtttgttt 383
           |||||||||||||||||||||||
Sbjct: 190 tttgtttgtttgtttgtttgttt 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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