BAC Information

Click to search

BAC

Clone NameMSMg01-271P11
Chromosome12 (Build37)
Map Location 113,280,605 - 113,280,908
singlet/doubletsinglet
Overlap geneTdrd9
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271P11.T7 (MSMg01no271_p11.b1)MSMg01-271P11.TJ (MSMg01no271_p11.g1)
ACCAG411375AG411376
length747749
length of high quality
(start - end)
308 (43 - 350)597 (68 - 664)
definitionCHROMAT_FILE: MSMg01no271_p11.b1 PHD_FILE: MSMg01no271_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005CHROMAT_FILE: MSMg01no271_p11.g1 PHD_FILE: MSMg01no271_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAAGCCTGGGGCAGAAGGAAAAGCACTCTGAAACAGGTTCATAAATG
GAGAAAAACCTAATGATAACTTCTCCTGAAATGTGACTTTCCAGAAAGCT
AAATAAACATGGCTTCATTTCTTTTTTTTTTTAATTTTTAAATGTATGTA
TGTATTTGTTTTGCAGAGTCTCACTATGGCGGCTGGCTTGGAACTCACTA
TGCAGTCCAGGCTGCCCAGCTCAGGTGATCTGTATTTCCCTCTGCCACCC
AGTGCTAGGATGACAGTGTGTGTCAGCGTCCCAGACTGCCTTCCTTTGTC
ATTTTTTTTATTACCCCACCGCCCATTTAAGTGTGCTCTTTGGGAAGGAG
TATGCAAGCCCACACCAAAAGACAACAGCCTGAGCTAAGAGCATAAGAGG
AGGCTGCAGTGGTCTGAGTGAGAATGGAACCCCAGGCTGCAGTGGCCTGA
GTATTTGCATGCTTGATCATCATGGAGTGCAACTCTTTTTGAAAGGTTTG
GGGAAGATTTCTAATCTTGTGTGGTCTTGTTAGAGGAAGTGGGGNTTCAA
AAGCTCACACCAGACTCCCTCTGCCTACAGATCAGGATGCAGTGCTCAGC
TCCTTCTCCAGTACCACACCTGCCTGCCACCACACTTTCTGCCATGATGA
TGCACTAATCCTCTGATGCTGTAATTCATACCCAATTTATTTGTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGCATCTGTAAGCCACCAGCTATGGGCATCA
TCTTCCTAAAGAACAACCAGCACTTTGTACTGCTGAGCCATTCCTCCAGT
CCTAACTGTCCAAACTTACTGTTGCAAAGTTTTTATTTATTTATTTACTG
TATATGAGTACACTGTAGCTGTACTGATGGTTGTGAGTCATCATGTGGTT
GCTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACC
GCTGAGCCATCTCTCCAGTCCAGCCCAGACTTACAAATGGCTGAATACTA
TGTAATGTTCTCTGAACTTACATTATTACTTGGTGGTGGTGCACACCTTT
AATGCCACCCCTTGGGAGTCAGAGGCAGGCAGATCTCTGAGTTGCCAGTC
TGGTCTACAGAGTGAGTTCCAGTACAGCCAGGGCTACACAGAGAAACTCT
GTCTCAAAAAACAAGCGCAAACAAAAAAGAATAATTCTATTCATATGAAA
TGCCCGGAGCAAACTACCCATGAAGACAGGAAGCAGACTAGTGGCTGCCA
GGAGCTGCAGGGACAGTTGATAAGAATATGGTTTCTTTGGGGAGATGAAG
ATATAAATAACTAGATAGCCATAATGATGGTACAATTGTGGATGTTTTTA
AAAGCCCAGAACTATGTGATTATGTATCAATAAAACTTATTTAAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_p11.b1 MSMg01no271_p11.b1 CHROMAT_FILE:
MSMg01no271_p11.b1 PHD_FILE: MSMg01no271_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:58 2005
         (308 letters)



>mm_chr12_113280580_113281287
          Length = 708

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaagcctggggcagaaggaaaagcactctgaaacaggttcataaatggagaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaattccaaagcctggggcagaaggaaaagcactctgaaacaggttcataaatggagaaa 270

                                                                       
Query: 65  aacctaatgataacttctcctgaaatgtgactttccagaaagctaaataaacatggcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacctaatgataacttctcctgaaatgtgactttccagaaagctaaataaacatggcttc 210

                                                                       
Query: 125 atttctttttttttttaatttttaaatgtatgtatgtatttgttttgcagagtctcacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atttctttttttttttaatttttaaatgtatgtatgtatttgttttgcagagtctcacta 150

                                                                       
Query: 185 tggcggctggcttggaactcactatgcagtccaggctgcccagctcaggtgatctgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tggcggctggcttggaactcactatgcagtccaggctgcccagctcaggtgatctgtatt 90

                                                                       
Query: 245 tccctctgccacccagtgctaggatgacagtgtgtgtcagcgtcccagactgccttcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tccctctgccacccagtgctaggatgacagtgtgtgtcagcgtcccagactgccttcctt 30

               
Query: 305 tgtc 308
           ||||
Sbjct: 29  tgtc 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)