CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACCTTAAGGACTTTAAAATCAAGTGTAAGCAACAAATAATAAA
CACATGAGAGGTTTGAATAATAATTTCCCACAATAGAAGAGATATATGTG
ACAGGGATGCATATAAAACTGCTGAATATGTTTAAAGAGTTCAGAGGAAG
GAGAAAGGCGATCTAGAAGTGATGTGATGGTTGAGCCTGGTACAAAAGAT
AAATTCAGAGAGGGACAATAAGGAGAAAGGAAATAATAGGAACAAAGTCT
AAAGCCTGGAAGGAAAGAGACAAAAATTTATCATCACCAAGTAGGATTGC
CTGATAAAATATAGGACATTCTATTAAATTACAATTTCAGATAAGCAACA
AATAAACTTTAGTGTAAAAACACTGGATGCATACTTATCTGAAATCAGCT
TTACCTGGTATCCAGAACACAAAAATTTTCAAGGGAAAATGAATGTTCCC
TTCACCCAGGGGATTGGGAACTTGGAAGGATGAAAAAAGATATTCAATGG
TGGTGGATGCTTCATAAAGCCATAGACATGAGACCTTGTCCCCAAGATAC
CATTGGTGACACCTGGCACAGCGATGAAGACAGAGGTTCAAGCCATAGAT
AGAGATTACTCTGTTGAGAATTTTAGTGATAGGAAGAGGAAACACATGGC
CCCCGGCCCTCTTCTCACACTGCTCCTCATGCTGTGTGCAN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTCCTGGCTAACAGTGATGGTCTCTGAG
TCTTCAGATGAAGTGTTCTCACCAAGCCTGAGGCCCCTCCCCTCTTTTTA
GTGTCCAGTTCCCATGTTGTACGAGGCTGCCAGCCAAAGGACCAATTAGT
GTCAACTGTGATGTCAACGCTTGCCTGGTAAGTCTTGGATCCAGCCACAT
CGTCCTAATGAAGCTCTGGACGATTTATTTAGGAGGCTCTGACAATTCTG
TCCTTATTGCAGCACCTATATTATTGTAACACCAGGGAGAAACTTTCCAC
TGAACCCATGTTATTTTTTTCGCCCCCCCCACCTGAGATAATTAGGATTC
GTTCACCTTGCCAATGTATGGAAATAAAAAAAAAAAAAGCTTCTCACCTA
TCTAGTGTGAAGGAGTATAGACACAGCCCCGCATAACACATAGATCCTTT
TCTCCCCTATCACAGTGGTTGTGTGGCTTCTGCCTTATTTCCCACCTGAT
TTCCCCTCGAATTTATCTTTAAGGTCTTTGTCTTTAGAGCACGTAATATA
CTTTCATTTGAGTTCCGGCCTCTGGCCCTTTACCTGTCTGACCAACCCTT
GTGATTGAATTCTCGAATGGTTTCTGGATTCATCTCTGCTTTTTTTTCAT
TGGTTAATTTGACTCTAATAAATGATATGATATCTTGATCCAGCTATCAA
ATTCATATAATATAAAA

Query= MSMg01no272_b01.b1 MSMg01no272_b01.b1 CHROMAT_FILE:
MSMg01no272_b01.b1 PHD_FILE: MSMg01no272_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:06 2005
         (333 letters)



>mm_chr12_79232306_79233038
          Length = 733

 Score =  598 bits (309), Expect = e-175
 Identities = 324/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaccttaaggactttaaaatcaagtgtaagcaacaaataataaacacatgaga 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattctgaccttaaggagtttaaaatcaagtgtaagcaacaaataataaacacatgaga 474

                                                                       
Query: 65  ggtttgaataataatttcccacaatagaagagatatatgtgacagggatgcatataaaac 124
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggtttgaataataatttaagacaatagaagagatatatgtgacagggatgcatataaaac 414

                                                                       
Query: 125 tgctgaatatgtttaaagagttcagaggaaggagaaaggcgatctagaagtgatgtgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgctgaatatgtttaaagagttcagaggaaggagaaaggcgatctagaagtgatgtgatg 354

                                                                       
Query: 185 gttgagcctggtacaaaagataaattcagagagggacaataaggagaaaggaaataatag 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 353 gttgagcctggtacaaaagataaattcagagagggacaatgaggagaaaggaaataatag 294

                                                                       
Query: 245 gaacaaagtctaaagcctggaaggaaagagacaaaaatttatcatcaccaagtaggattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaacaaagtctaaagcctggaaggaaagagacaaaaatttatcatcaccaagtaggattg 234

                                        
Query: 305 cctgataaaatataggacattctattaaa 333
           |||||||||||||||||||||||||||||
Sbjct: 233 cctgataaaatataggacattctattaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_b01.g1 MSMg01no272_b01.g1 CHROMAT_FILE:
MSMg01no272_b01.g1 PHD_FILE: MSMg01no272_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:06 2005
         (185 letters)



>mm_chr12_79092530_79093114
          Length = 585

 Score =  335 bits (173), Expect = 1e-96
 Identities = 182/185 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcccctcccctctttttagtgtccagttcccatgttgtacgaggctgccagccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggcccctcccctctttttagtgtccagttcccatgttgtacgaggctgccagccaaag 260

                                                                       
Query: 61  gaccaattagtgtcaactgtgatgtcaacgcttgcctggtaagtcttggatccagccaca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gaccaattagtgtcaactgtgatgtcaacgcttgcctgggaagtcttggatccagccaca 320

                                                                       
Query: 121 tcgtcctaatgaagctctggacgatttatttaggaggctctgacaattctgtccttattg 180
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tcatcctaatgaagctctggacgatttaattaggaggctctgacaattctgtccttattg 380

                
Query: 181 cagca 185
           |||||
Sbjct: 381 cagca 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)