BAC Information

Click to search

BAC

Clone NameMSMg01-272E01
Chromosome12 (Build37)
Map Location 37,293,696 - 37,430,849
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E01.T7 (MSMg01no272_e01.b1)MSMg01-272E01.TJ (MSMg01no272_e01.g1)
ACCAG411588AG411589
length719725
length of high quality
(start - end)		645 (46 - 690)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_e01.b1 PHD_FILE: MSMg01no272_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:21 2005CHROMAT_FILE: MSMg01no272_e01.g1 PHD_FILE: MSMg01no272_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,430,208 - 37,430,849)(37,293,696 - 37,293,982)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATGTTACCTTGTGTTGTTGACATAGATATGACCATGTCATGGA
CCCCATAACCTCAGGCTTGGAGGGATGACAAAGCCTTCTTCAAGGAACTG
AGTATTAGTGTCAAAAATGTACTCAGAAAATGTCTACTACAGCCATCCTC
CTCCTAAATATTTATGGCCTGAAGCCTGCTTCCCTAAAGAGAATAGATCC
TATCAATATTGGCTATTACCCCTTGACCCAGGTATACATCATAAACACTA
TATCATTGTTTATCTATATGTGATAACACTTCTTCTCTGTTCAACTGTAT
ATAATACACATTCTGAGCTTCTGGGGTGCTGCAATTTATCCAACTGAGAG
CCCAGACCTCCAGATTCAGATTTCTGCCCATCTGTGTATATGTATGTCTG
TCTTTTCTTCATTTTCTCAGAGCCCCAGTCAACTCCATTCTTGGAAGCAT
GCATGGATGTGACCGACAAACCATATACAGTTAAGTGTCTGCATTTTCAT
AGAGACCTTTCTATTTACTAAGTAACTGGAGACATAAGATTAAAGTTTAT
AAAACTCAGGATGTCCTCATTCTTAATAGCTGAGTAGTATTCTATTGTTG
TGTAAATAAACCACATTTTCTGTATCCATTCTTTTGTTGCAGGCAAATGG
ATAGAACTAGAAAATATCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAAAGCAAGCTGTCAATTTCT
GTCTGGATGGGAAGGCTGGAGAGGACTGAAGGGTGAACCTTCCAGAGATA
GTTTGAAAGTTATAAAAAGGAAAGAGGCTTCTTATATCATTCACAGCCAG
GCCCTGGACTCAGGGAGGGAGACATTAAAGATAATTGGTCAGCTTGAGGA
TTTCTATATCTTTTCTAACTGCATGAAAGGCAGTCTGGAAATTTCACCAG
GTTTGACATCACTTTAGGCAGTAGGCTGAGACCCTCCTCAGTCCTGGGAC
ATGCTCATCTTAGTGGTGGATTACCACGCACCAGGGCATCCCACAAGCCA
GGTGCACTGTTCCTGAGGGTGCTCTGGTCAGCACAGTGGCTGGAAGGAAG
AGAAAGGCATGGCATGAAGAGTGGGTCAGTTTAAAAATAAACGACTGTAA
GAAAGTTAGAGCTGTATAGAAATGCTTGGCTGAGGAGGAGGAGTGCTTAG
AGCCTCTCTCTGTTTCTGTTATGCATCTAATTTGGCTTGGTAGCTAAAGT
GCAGAAAGGAGCAGTTCTTTCCCCAGTGAGACCTTCCTTTTTCAGCTTAT
CTTACTTACCTCTGCCTGAAGGCATCAGCGCATTGGCACTGATTACTGTA
GAGCACCTACTAGTATGCTTGCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e01.b1 MSMg01no272_e01.b1 CHROMAT_FILE:
MSMg01no272_e01.b1 PHD_FILE: MSMg01no272_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:21 2005
         (645 letters)



>mm_chr12_37430101_37431145
          Length = 1045

 Score = 1234 bits (638), Expect = 0.0
 Identities = 641/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctatgttaccttgtgttgttgacatagatatgaccatgtcatggaccccataa 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaattcctatgttaacttgtgttgttgacatagatatgaccatgtcatggaccccataa 690

                                                                       
Query: 64  cctcaggcttggagggatgacaaagccttcttcaaggaactgagtattagtgtcaaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cctcaggcttggagggatgacaaagccttcttcaaggaactgagtattagtgtcaaaaat 630

                                                                       
Query: 124 gtactcagaaaatgtctactacagccatcctcctcctaaatatttatggcctgaagcctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gtactcagaaaatgtctactacagccatcctcctcctaaatatttatggcctgaagcctg 570

                                                                       
Query: 184 cttccctaaagagaatagatcctatcaatattggctattaccccttgacccaggtataca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cttccctaaagagaatagatcctatcaatattggctattaccccttgacccaggtataca 510

                                                                       
Query: 244 tcataaacactatatcattgtttatctatatgtgataacacttcttctctgttcaactgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcataaacactatatcattgtttatctatatgtgataacacttcttctctgttcaactgt 450

                                                                       
Query: 304 atataatacacattctgagcttctggggtgctgcaatttatccaactgagagcccagacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atataatacacattctgagcttctggggtgctgcaatttatccaactgagagcccagacc 390

                                                                       
Query: 364 tccagattcagatttctgcccatctgtgtatatgtatgtctgtcttttcttcattttctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccagattcagatttctgcccatctgtgtatatgtatgtctgtcttttcttcattttctc 330

                                                                       
Query: 424 agagccccagtcaactccattcttggaagcatgcatggatgtgaccgacaaaccatatac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agagccccagtcaactccattcttggaagcatgcatggatgtgaccgacaaaccatatac 270

                                                                       
Query: 484 agttaagtgtctgcattttcatagagacctttctatttactaagtaactggagacataag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agttaagtgtctgcattttcatagagacctttctatttactaagtaactggagacataag 210

                                                                       
Query: 544 attaaagtttataaaactcaggatgtcctcattcttaatagctgagtagtattctattgt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 attaaagtttataaaactcaggatgtcctcattcttaatagctgagtagtattctattgt 150

                                                     
Query: 604 tgtgtaaataaaccacattttctgtatccattcttttgttgc 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tgtgtaaataaaccacattttctgtatccattcttttgttgc 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_e01.g1 MSMg01no272_e01.g1 CHROMAT_FILE:
MSMg01no272_e01.g1 PHD_FILE: MSMg01no272_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:21 2005
         (287 letters)



>mm_chr12_37293496_37294182
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaagcaagctgtcaatttctgtctggatgggaaggctggagaggactgaagggtga 60
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 201 agttaaagcaagctgccaatttctgtctggatgggaaggctggggaggactgaggggtga 260

                                                                       
Query: 61  accttccagagatagtttgaaagttataaaaaggaaagaggcttcttatatcattcacag 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 accttccagagatagtttgaaagtcataaaaaggaaagaggcttcttatatcattcacag 320

                                                                       
Query: 121 ccaggccctggactcagggagggagacattaaagataattggtcagcttgaggatttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggccctggactcagggagggagacattaaagataattggtcagcttgaggatttcta 380

                                                                       
Query: 181 tatcttttctaactgcatgaaaggcagtctggaaatttcaccaggtttgacatcacttta 240
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tatcttttctaactgcattaaaggcagtctggaaatttcaccaggtttgtcatcacttta 440

                                                          
Query: 241 ggcagtaggctgagaccctcctcagtcctgggacatgctcatcttag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagtaggctgagaccctcctcagtcctgggacatgctcatcttag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |