BAC Information

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BAC

Clone NameMSMg01-273A15
Chromosome12 (Build37)
Map Location 97,536,696 - 97,536,990
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273A15.T7 (MSMg01no273_a15.b1)MSMg01-273A15.TJ (MSMg01no273_a15.g1)
ACCAG412155AG412156
length742748
length of high quality
(start - end)
296 (431 - 726)369 (378 - 746)
definitionCHROMAT_FILE: MSMg01no273_a15.b1 PHD_FILE: MSMg01no273_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:20 2005CHROMAT_FILE: MSMg01no273_a15.g1 PHD_FILE: MSMg01no273_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCCTAG
GTATCCCAGACTCTAGATGGCCTTTCCTTCAGTCTCTACTTTGATTTTTG
TCCCTGACTTTTACCCACATCTCTTCTTTAAAACAATTCTTTACCAGAAG
TTCATTGGATTTTTTTTTTCTATTTGAATAGGAAATAATGCCTTTACAAA
TGCATTTTCTTAATGGCACTTTTAATGAATCTCCACAGGATTCCCATCAT
GAGAGAAACAGAATTATAGACCATAAGGAAATACCTTTTGAGCATCTACA
GCCATATGATAGTGTATGAACTTTTCTGTTTCTCCAAAGGCTCCAACACT
ATGTTGGTTTTTAACCCCCCCCCCCGCCCGCTTTGTCACTCTTTGTCTAA
AAGTATGAGATGTAGCAATGATAAAATATGTTTTTTACATAAATTGAGTA
TCAACCAAAAGAGATTTTATGAAGTATGAACCAATCCCTGATTCTGTAAA
TCTTAAGATATTTACAAACTCATTTACATTATTTGCTACTTGGTTTCTTT
AAGGATGAGTAGAATGATGCCTTCTACCAGCCCTTTTTTTTTGTAGTTGA
AGAAATACTAGTAACATAAACAAATTTATTGTACCCATTACATAATTGTC
TTCATTAACCTTGTTCAGTCGAGACTGAAACCATAGAAATTATCAATATG
TGCTAGAAAGGTGATTATAAATTTATGAGCACTTGTATTATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACAAAACCATCTGGGATCTAAAATCAGAAGTAG
AAACAATAAAGAAATCCCAAGGAGAGAAAATTCTGGAGAAAAACAAGCAA
CAAAATAAATTTAAAAAAAAACAAGGAAAGAGATCAAGAGTCATAGATGC
AAGCATCACTAACAGAATACAAGAGATAGAAGAGAGAATCTCAGGTGCAG
AAGATACCATAAAAAACATTGACACAACAGTCAAAGGTCCTAACCCAAAA
CTTCCAGGAAATCCAGGAAACAATGAAAGGACAAAACCTATGGGTAATAG
GTATAGAAGATAACAAAGATTTCCCACTTAAAGGGTCAGTAAATATTCTC
AACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGAAAGAGATACTCAT
GAACATACAAGGAGCCTAAAGAATACCAAAAGACTGGACAAGAAAAGAAA
TTTCTCCTGTCATATAATAGTAAAAACACCCAAATGCACAAAACATAGAA
ATAATATCAGAAGCAGTAAGGGGAAAAGGTCAAGTAGCTGTAAAGTCAGA
CCTATCAGAATTATACCAGACTTCTCGCCAGAGACTATAAAAGCGAAAGA
TCCTGGGCAGAGGTCATGCAGACCATAAGAGAACATAAATGCCAGCCCAG
GCTATAATACCCAGAANAACTCTTAGTTACCATAGATGGAGAAACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_a15.b1 MSMg01no273_a15.b1 CHROMAT_FILE:
MSMg01no273_a15.b1 PHD_FILE: MSMg01no273_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:20 2005
         (296 letters)



>mm_chr12_97536496_97537190
          Length = 695

 Score =  503 bits (260), Expect = e-147
 Identities = 287/296 (96%), Gaps = 1/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttacataaattgagtatcaaccaaaagagattttatgaagtatgaaccaatccctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttttttacataaattgagtatcaaccaaaagagattttatgaagtatgaacctatccctg 260

                                                                       
Query: 61  attctgtaaatcttaagatatttacaaactcatttacattatttgctacttggtttcttt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 attctgtaaatcttaagatatttacaaactcatttacatta-ttgctacttggtttcttt 319

                                                                       
Query: 121 aaggatgagtagaatgatgccttctaccagccctttttttttgtagttgaagaaatacta 180
           ||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 aaggatgggtacaatgatgacttctactagccctttttttttgtagttgaagaaatacta 379

                                                                       
Query: 181 gtaacataaacaaatttattgtacccattacataattgtcttcattaaccttgttcagtc 240
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 380 gtaacataaacaaatttattgtaccaattaaataattgtcttcattaaccttgttcagtc 439

                                                                   
Query: 241 gagactgaaaccatagaaattatcaatatgtgctagaaaggtgattataaatttat 296
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagactgaaaccatggaaattatcaatatgtgctagaaaggtgattataaatttat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)