BAC Information

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BAC

Clone NameMSMg01-273A20
Chromosome12 (Build37)
Map Location 12,392,390 - 12,392,679
singlet/doubletsinglet
Overlap genenone
Upstream geneVsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273A20.T7 (MSMg01no273_a20.b1)MSMg01-273A20.TJ (MSMg01no273_a20.g1)
ACCAG412165AG412166
length745743
length of high quality
(start - end)
321 (35 - 355)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no273_a20.b1 PHD_FILE: MSMg01no273_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:21 2005CHROMAT_FILE: MSMg01no273_a20.g1 PHD_FILE: MSMg01no273_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTCA
TGGTTTCTTGGCCCCACGTCCTTGGCTAGAACACTATGGTGGCAAGCAGA
TGTGGCAGAGAAAATCATTATACTGTGCTAGACAGGAAACAAAGAGAAAA
AGAGACTGACTATCTTGCTCTACAACCTCACCAGTGATGTGACTTCTCCA
GCAAGGTCTCTGCCCTAAGTTTCTACAACCTCATAATAGCACCATGAAAT
GGTGACAAAATGTTCAAAACATGAGCCTATGTGAGGCATTCCATATTCAA
ACCATAATATTTTGTTCTTGACTCTCAAATGCAAATTACTTTAAAAATCA
TTTTATTGTTTTTAGCCCCCCCACCGCTGTGACCCCTTCATATACAGTTC
CTGTCACTTTGCGGTGTATCCTAGAACATAACATTATTTCATTGCTACTT
CATAACTCTGATTTTGCTTTTGCTATGAGTCATAATATAAATTATCTAAT
ATGCAGGATATCTGATATGTGACCGTCCAACAGGGTCACAACACACAGGT
TGAGAACCACTGTTCTAGGGGATCATAGGGGATCTCCTTGAGTCTTAGAA
GAGACTGTAAATACTTTGGTGACTCGTGGAGATGGACAAATGTGTTTTAC
AACATAAAATAGATGTAATAGTGGTGAGAACCAAGAGGAGAATGTTACGG
CTTGAATATATAATGTCCCTTAGAGGGTTATTCTCAGTCTCCGAA
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTATGGCTGCAAGTGAAGATTGTTGACCCAGGGCAA
AGGAAGGAAGCACTCAGGAGCGCATCCTTTCTGGTTCCTCCCAAGCTCTG
TCACCTGTGGCTGCAGGGCGAAGTAACTGGGTCACTCACTCACTCACTAT
AAACCCGTTAACAATATGCTTTAGAAAGGCAGAGACTTCCCATGTTCTAG
GGACCTATAAAATATGATTCTATGTGCTGATTGTTCTGATAGAGATGACT
ACAAAGTCATGTGATAGGAAGGATGGAAAACCTGGCCTAGTTAAGGTCAG
GTTGTTTCATAGTCAAGGCACTTACCCTGCTGAGCTCAGCTGTGGAGACA
AGAGGGAGATAGTAGTGAAAAATAGAGAGGGGCGGGGGGGGGACTCTTAA
CTGATANAGGTATCAGCATAAACAAACGCAGTGAGGTTGGACTCCTGCAG
AGACAGTCTATGGCTGACACACTTAGTTCTGGCTTAGTAGGAGTGAAGGA
GAGGACAAACTATGTCAACTCTGCGAGACCTATCGCTGGACAAGAATGTA
CAACGACCTGATGCTCCAACTCAGTGGTTTCCTATTGCTCCACATACTCC
TTGCCTTCCCCCCCCTTTTNTTTACGAAATTGCCCACCCCTATTCCCTTT
TTCTCACTACCCCTTCCTATACACTCCATCAACTCCATATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_a20.g1 MSMg01no273_a20.g1 CHROMAT_FILE:
MSMg01no273_a20.g1 PHD_FILE: MSMg01no273_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:21 2005
         (293 letters)



>mm_chr12_12392190_12392882
          Length = 693

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatggctgcaagtgaagattgttgacccagggcaaaggaaggaagcactcaggagcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatggctgcaagtgaagattgttgacccagggcaaaggaaggaagcactcaggagcgca 260

                                                                       
Query: 61  tcctttctggttcctcccaagctctgtcacctgtggctgcagggcgaagtaactgggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttctggttcctcccaagctctgtcacctgtggctgcagggcgaagtaactgggtca 320

                                                                       
Query: 121 ctcactcactcactataaacccgttaacaatatgctttagaaaggcagagacttcccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcactcactcactataaacccgttaacaatatgctttagaaaggcagagacttcccatg 380

                                                                       
Query: 181 ttctagggacctataaaatatgattctatgtgctgattgttctgatagagatgactacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctagggacctataaaatatgattctatgtgctgattgttctgatagagatgactacaa 440

                                                             
Query: 241 agtcatgtgataggaaggatggaaaacctggcctagttaaggtcaggttg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcatgtgataggaaggatggaaaacctggcctagttaaggtcaggttg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)