XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATA
GTACCAGCTGGAAAACTCATCTTAGGAGTCTCCCATAGGACAGAGCTGCT
CCCTGACAGCTATGTGCACCTGTTTCCATCACTACCTCTGAGCACGCAGC
CATACCCCATCTCAAGCATGTTATGTTCACACTATAACAGGTGCAGGCCT
AGCATGGTCAACTCCACTCTGCAAATGCAATAAGTGAGTTTTAGGCAGTA
AAGGACTCTGGGCTTCAGTGGGGCAGAAGCTTCCTAGAGCAGGGACTCAA
GCCCCCTTCTCCATAAACCAGCCCTTTCCATTCACATTCTTCTGCAAACA
CTCCCTTTTTTCTTATCACCCCACCACACTCACAGGCAGAAATCCTGGAA
CTCTCTGCAGGCAGCTCCTCTAAATCTGCTTCACGTTCATAGACCAGAAA
CCAGTGGCCCTGACAGTGCAGCTGAGGAAGGTAAGTCTCCAGCCCAGTCT
TGCTGGCAGGTTGTGTATGGCATGTCCTTGTGAGCAATTCTGTTCTCTGC
CCTCTTTCCCAGCTTCCACGGTATACCTAGGCTTTTCGCAGTCTCCCAAG
TCCTCATTCTTTTGCCTTCCCCTCACCCCATGAAATGGTTCTCCATCATA
TGCCAGGAAAGAGCAGTTTTACAGTCTTCCTCCCAGGGAATTAAACTGAG
GTCCAATCCTTTAACCCATTCTATGAGGTGGGCACCTGCGTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCTACTTTTGGGACAGAAGCAGCAGTGGTGTAC
GAAAGTGTTCATATCTCTCACTCTCCAGCCTCACCACCGTTTTGAGGCAA
TCTGCTAGACTGAATTGTTAATCTCCCTGAGATTTAATTTGGATTGTCCC
GAGTCAGGCGAAGTAGCCCATTTTCTTGTTGGTACTCAATTTGCATTTCC
TGTTTGGCAAATTGCCTATTCATATCCTAGAGCCAGATTCCTCTCTGGCT
TTTCTTTACCTCCATTCAGTTTCTAGGATCCCTTCCTGCACGAGGAATAT
AACCTTTGTTTTTTGACCCCCCTCCCCAAGTGCCATCCCAAATATGACAT
TTTTGAGAGCTGATGAACTCAAGGAAAGACGGAGCTGGAAACTGCAAGTG
TAGGCTTAGCTGTACCCCTTATCTACATAAAGACATCCTCCCAAGGCAGC
TAGGCTGTTCTGAATCTACTCTCCAGTTTCTTATCTCCCAGTGGAGATTA
CCTCCGTGACACCCAGCCAAGGTAGACTCTCCCTGACCTATTCTGTGGGC
CGCTTCCAGACAGGGTTAATAATACCTGAGACTGTATCGGTCTGATAAAG
TCAGACGTGCGTTCCTTCCCTCAGCTCCCAGAACGCTAGGCATCCCGGGA
CACTGCATGAGTCTCAGTCATTTGACCGTCCTTCAGACCTCAGA

Query= MSMg01no273_c02.b1 MSMg01no273_c02.b1 CHROMAT_FILE:
MSMg01no273_c02.b1 PHD_FILE: MSMg01no273_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:27 2005
         (321 letters)



>mm_chr12_12768254_12768974
          Length = 721

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatagtaccagctggaaaactcatcttaggagtctcccataggacagagctgc 64
           |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct: 205 gaattcccatagtaccagctggaaaactgaccttaggagtctcccatagggcagagctgc 264

                                                                       
Query: 65  tccctgacagctatgtgcacctgtttccatcactacctctgagcacgcagccatacccca 124
           ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct: 265 tccctgacagctatgtgcacctgttcccattactacctctgaacacgcagccatgcccca 324

                                                                       
Query: 125 tctcaagcatgttatgttcacactataacaggtgcaggcctagcatggtcaactccactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcaagcatgttatgttcacactataacaggtgcaggcctagcatggtcaactccactc 384

                                                                       
Query: 185 tgcaaatgcaataagtgagttttaggcagtaaaggactctgggcttcagtggggcagaag 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 tgcaaatgcaataagtgagttttaggcaataaaggactctgggcttcagtggggcagaag 444

                                                                       
Query: 245 cttcctagagcagggactcaagcccccttctccataaaccagccctttccattcacattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttcctagagcagggactcaagcccccttctccataaaccagccctttccattcacattc 504

                            
Query: 305 ttctgcaaacactccct 321
           |||||||||||||||||
Sbjct: 505 ttctgcaaacactccct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_c02.g1 MSMg01no273_c02.g1 CHROMAT_FILE:
MSMg01no273_c02.g1 PHD_FILE: MSMg01no273_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:27 2005
         (293 letters)



>mm_chr12_12952496_12953188
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctacttttgggacagaagcagcagtggtgtacgaaagtgttcatatctctcactctc 60
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 493 tttctacttttgggacagaagcagcagtggtgtatgaaagtgttcgtatctctcactctc 434

                                                                       
Query: 61  cagcctcaccaccgttttgaggcaatctgctagactgaattgttaatctccctgagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagcctcaccaccgttttgaggcaatctgctagactgaattgttaatctccctgagattt 374

                                                                       
Query: 121 aatttggattgtcccgagtcaggcgaagtagcccattttcttgttggtactcaatttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aatttggattgtcccgagtcaggcgaagtagcccattttcttgttggtactcaatttgca 314

                                                                       
Query: 181 tttcctgtttggcaaattgcctattcatatcctagagccagattcctctctggcttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttcctgtttggcaaattgcctattcatatcctagagccagattcctctctggcttttct 254

                                                                
Query: 241 ttacctccattcagtttctaggatcccttcctgcacgaggaatataacctttg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttacctccattcagtttctaggatcccttcctgcacgaggaatataacctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)