BAC Information

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BAC

Clone NameMSMg01-273J23
Chromosome12 (Build37)
Map Location 68,107,820 - 68,108,154
singlet/doubletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J23.T7 (MSMg01no273_j23.b1)MSMg01-273J23.TJ (MSMg01no273_j23.g1)
ACCAG412572AG412573
length721749
length of high quality
(start - end)
335 (387 - 721)92 (71 - 162)
definitionCHROMAT_FILE: MSMg01no273_j23.b1 PHD_FILE: MSMg01no273_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:01 2005CHROMAT_FILE: MSMg01no273_j23.g1 PHD_FILE: MSMg01no273_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCAGTGCTTTGTGCTTCTACAAGACACTCCTAATTAAAAAGCCAAGGAC
AGCAATGAGCTGCCTGTAGCTCCCCGTATGGCTACTGTTGTTTGTAAGAA
TTCTGAGGCTAATGCTATCAAAATGTTTTTGATGAAAAGCTATTTACTGT
GGTTATGATTATTTTATAATTACCCAAATTAATGCTCTCTCTCAAACACT
ATTTTCTAAGACTTCATATGCTCTCTTTACATCCTGCCCTCTTTCCTTTG
AAAAAGCAATTGTATCTATAATCATTGCTTGCTGCATGCCTTTCTCATGT
GCCCTTGAGGGCATTTCTCTCACACCCCCCCCACTAAAGTTATTCCATTG
CATTTCTGTGTCTTAATATTGCCACATGTCTTGATATATATTGTGATCTA
AAAATAAGAAAAACATAAATGAAGTTAAATGAATATTTTGGTCCTGATCT
GCAACCAATATCTAAAATTGTCACTCATCTTAAAACCTATTTTATCCATT
TACACCATTTATGCAACATATTGAAATAAAAATGATTATTTCAACTTATG
CTTTCAAAAATATTTTCATAAAAAATTCATAATTAATGTTTCATATGTTT
AGTTGTGTTGTATATATTTGTGATCTCAAGATGGAGAGGACAGTTTTCCA
AAGTGTTTGCACTTATAATTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTTTACAAGGAGAGGATATACCTAGTCC
TGTAGAGACTTGGTGCCCAACCGGAAGGGGGATGCTGGGGGGTTGAGGTG
GGGGTGGCTGNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGNNNNNNNNNGNNNNNGNNNNNNNNGNNNNNNNN
NTTTTTTTTTNTGTTTTTTTTTGTTTGTTTTTTTTGTTTTTTTTTTTGTT
GNGGGGGGGGGGGGGGGGTTTTTTTTTTTTGGGGGGGNGGGGGGGNGGGG
GGGGGGGGGGTTTTGGGTGGGCCTCAAGAGCAGAAGACCCGGGTTTTGTT
TTTTTTTTTTTTTGTGTGTTTTTTTTTAAAAAATNTATAAAAAAATTTGG
GGGGGGGGGGGGGTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTNTTTTGT
TGTTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTTTTTGTGGTTTGTTTGT
GTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTTGTTGTTTTTTTTTTTGT
TTTTTTTGTTGTGTTGATATTTTATATATTATAATAATTTTTTATATTAA
TAATTATTAGAATTATATTTAGTATATTAATAATATTTATTTTTTATTGT
AAATAATATATAAAATTTAATAAAATTATTATATTTAAAGTGTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j23.b1 MSMg01no273_j23.b1 CHROMAT_FILE:
MSMg01no273_j23.b1 PHD_FILE: MSMg01no273_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:01 2005
         (335 letters)



>mm_chr12_68107620_68108354
          Length = 735

 Score =  557 bits (288), Expect = e-163
 Identities = 324/336 (96%), Gaps = 2/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttattccattgcatttctgtgtcttaatattgccacatgtcttgatatatattgtga 60
           |||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 535 aagttattccattgcattcctgtgtcttaatattgccacatatcttggtatatattgtga 476

                                                                       
Query: 61  tctaaaaataagaaaaacataaatgaagttaaatgaatattttggtcctgatctgcaacc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctacaaataagaaaaacataaatgaagttaaatgaatattttggtcctgatctgcaacc 416

                                                                       
Query: 121 aatatctaaaattgtcactcatcttaaaacctattttatccatttacaccatttatgcaa 180
           ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct: 415 aatatctaaaattgtcactaatcttaaaacctatgttatccatttaccccatttatgcaa 356

                                                                       
Query: 181 catattgaaataaaaatgattatttcaacttatgctttcaaaaatattttcataaaaaat 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 catattgaaataaaaatgattatttcaacttatgctttctaaaatattttcataaaaaat 296

                                                                       
Query: 241 tcataattaatgtttcatatgtttagttgtgttgtatatatttgtgatctcaagat-gga 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 295 tcataattaatgtttcatatgtttagttgtgttgtatatatttgtgatctcaagatagg- 237

                                               
Query: 300 gaggacagttttccaaagtgtttgcacttataattt 335
           ||||| ||||||||||||||||| ||||||||||||
Sbjct: 236 gaggagagttttccaaagtgttttcacttataattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)