BAC Information

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BAC

Clone NameMSMg01-273K18
Chromosome12 (Build37)
Map Location 50,225,662 - 50,225,866
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
Downstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273K18.T7 (MSMg01no273_k18.b1)MSMg01-273K18.TJ (MSMg01no273_k18.g1)
ACCAG412610AG412611
length746770
length of high quality
(start - end)
317 (36 - 352)39 (75 - 113)
definitionCHROMAT_FILE: MSMg01no273_k18.b1 PHD_FILE: MSMg01no273_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:05 2005CHROMAT_FILE: MSMg01no273_k18.g1 PHD_FILE: MSMg01no273_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGA
GAAATCTAATCTTAAAATTACTCTTTTATCATTTTGAAACTTGCCTATAT
GGTCAATTGGCACCTTTGTCTACCCAAGTGTCCTTCAAGTTCATAATCGC
TTTAACTAGTTTCTTTGACTGCGGGAAGCGGGTGTGGCTGCATGGGCCTA
GATGTCACCCTGGCCCATTGCCAGGCCTGTGAATCCCACATGTTTACTCC
CTTGCCCAAGCATGAGCAGTGAGGCTGCATGCATGGGCTGCCTGCCAGGC
TGGACTGTTCCTCGTGATCTGAACCTGTCAGCCTATCCGGGACTGGCCTG
ATTTTTTGTTCTGCCCCGCCCGCTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCGCCCCCTTAAAAAAAAAAAAAAAAACTTGCGGGGGGGGGGTCCTCC
TCTTTCTTTCCCTTTTCTCTCTCCTCCTCTTTTCTCTTCTCCCCCTTTCC
CCCTTTTCCCCCCCTTCCCCTTCCCCTTCCTTCTTTCTCCTCTTTCCCTT
CTCTTTCCGTCTCTCCTCTCTTGCCCCTTTTCCCCTTTTTTTTTTCTTCT
CTTTTCCTCTTTCCTTATCTTTTCTCTCCTTCCTTCTCTTCCCATTCTTC
CCCCTACTTCCCTTTTCTTTTGATCATCCCATATTCTATTCCTCCTTTCT
TCCTCTTTCTCTTTCTTCCCCTACTTCCCTTTTACTTTTCATCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAATGAAGATCAACATACCCAAACTTATGGGACACAAT
GAAAGCAGTGTTCCCGGGACTTGAAAGGAAAAGTGGAGGGGGGTATTAGG
GAAGGGGCAGGAATGGGAGGAGATGGCGATCCCCNCCCCCNNCCCCCCCC
CCCCCCCCCCCCCCCCCNCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCNNCCCCCCCCCCCCCCNNNCCCCCNCCCNCCCCCCCCCCCCNCCNNNC
CCCCCCCTCTTTTTTCCCCCCCCCCCCCCCCNCNTNNNNNNNTTTTTTTT
TTCCCCCNNNNCCCCNTCCCTTTTTTTTTTTTTTTTTTTNNTNNTNNCCC
CCCCCCCCAATATTTATTTTACACCCCGTGGCGGGCGGGGCTTCCCTCTC
TCCTTTCCCCCCCCTCTCCTTTCCTTCCCCCCCCCTTCCCCCCCCTTCTC
TTCCCCCCCTCCCCTTCTTCCCTCCCTCCTCCCCCCCCCCCCCTCTCCTC
CTCCCTTCCTCCCTTTCTCTCTTTCCTCCTCCTCTTCCCCCCCTCCTCCC
CCCCTTCTCTCTCTTCCCCCCCCCCCTTTTCTTCCCCTTCCCTTCCCCCG
CCCTCTCCCCCCCTCCCTTCCTTCCCTCCCCCCCCCCTCCTTCTTCTCCT
TCCTCCCCCCCCCCCTCTCCCCCCTCTTCCCTCCCCCTTTTTCTTTTCCC
CCCCTCCTCCCCCGCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_k18.b1 MSMg01no273_k18.b1 CHROMAT_FILE:
MSMg01no273_k18.b1 PHD_FILE: MSMg01no273_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:05 2005
         (317 letters)



>mm_chr12_50225533_50226249
          Length = 717

 Score =  350 bits (181), Expect = e-101
 Identities = 199/205 (97%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaaatctaatcttaaaattactcttttatcattttgaaacttgcctatatggtcaattgg 75
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 gaaatctaatcttaaaattactcttttatcattttgaaacttgcctatgtggtcaattgg 275

                                                                       
Query: 76  cacctttgtctacccaagtgtccttcaagttcataatcgctttaactagtttctttgact 135
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 274 cacctttgtctacccaagtgtccttcaagttcataatggctttaactagtttctttgact 215

                                                                       
Query: 136 gcgggaagcgggtgtggctgcatgggcctagatgtcaccctggcccattgccaggcctgt 195
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 214 gtgggaagcgggtgtggctgcatgggcctagatgacaccctggcccattgccaggcccgt 155

                                    
Query: 196 gaatcccacatgtttactcccttgc 220
           |||||||||||||||||| ||||||
Sbjct: 154 gaatcccacatgtttactgccttgc 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)