BAC Information

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BAC

Clone NameMSMg01-273L03
Chromosome12 (Build37)
Map Location 35,070,428 - 35,070,735
singlet/doubletsinglet
Overlap geneHdac9
Upstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273L03.T7 (MSMg01no273_l03.b1)MSMg01-273L03.TJ (MSMg01no273_l03.g1)
ACCAG412628AG412629
length613742
length of high quality
(start - end)
77 (73 - 149)308 (70 - 377)
definitionCHROMAT_FILE: MSMg01no273_l03.b1 PHD_FILE: MSMg01no273_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:07 2005CHROMAT_FILE: MSMg01no273_l03.g1 PHD_FILE: MSMg01no273_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTCCCCCTATANNCCCCCCCNNNGCTTCTATXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCGCGGAATCATTTGGAAGTCATTTGGG
AGTCCTGAAATTCCAGCCCTCACTCTCCCATGTCATGACAATAGTTAACC
CATGGAGACATCTCCACAGGCTTTTGCTTCCTCAGGTACAAATAAGGTGT
GAGCAGACTATTTTGAAGTTTGCACTCAGCCTTAAATGATAAGATTTTGG
GCAAAATTAATAAAGCTTATGTATATAAACTTTANAAACCCTTTTCACTG
GTGGTTAAGAATTTTGGCTTTAGGGAAAAAAAATGGCACTTCCCAGGGAA
TGGTAAACGGTTTTTTTAAGGCAAAAAAAAAAAAAAACCCCCGGAAAATT
TTTTTCAAAAAAAAATTTTTCAGGGGGGAACCCCCAAGGGTTTTATAAGG
GTTTGGTATCCCCCATTTAAAAAAAAAACCCCCTTGGGGGTTTTTTTTAA
AACGGGGAAAAGGGGGGGGCAAAAGGGGAAAAAAAAAAAAATTGTTTTCT
TAAGAGCTCTATACCCCCCTAGGGCCCCCCTTTTTTGGGGCCCAAAAAAA
AAAAAAAACTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGGAGAAAACTCACTCCGGAAGATT
TATCATTCTCTTCACAAGCATGACCACTATTTCCACAGAAAGATGCTTAA
CCATGCAGAAATCACATCTTATATCATCTCTTTGTGTGTTTTCGACAGCT
TTAACAGATAGAAATTATGAATTTTTATCCCCAGTGTATGTATATTTAGA
CTATGGCACTCAGTGTTTTGACAACCTTAAGGAACAAACAAACAAATAAA
CAAAGACTTTCTTTATCCTAGAACCACTTGGTTTTACCTTGTTTCACCTG
GGTTTTGTTTCTCCTGTTAGGAGTCAAAAGAATTGTCAAAATTTTCACAA
AATTATAAAAGAGCTGCCACAACCACCAAAAAAATAGTAGGATATGAACA
AGTTTTCTCCTGAGCCTGCCTTATAGGCTGTCAGTCTCCCCCACCCTACC
CCTCACCCCCAGGACAATAAAACAGTGATCTAGTTAAAAACAAACACACA
ACAGTCATTTTCCACAGGGAAGAGCTTTTAGATATAGTTTAACAAAAGTA
CACATATGCAGGCATGTCATTGTGGGCGTGTTGTTTTGCTGAATGCCCTT
TTCGTTGAAGAGGTGAGGACTCAACTCCATGTTGAGGCATCAGATCTCTG
ACATCCGCTGCCCTCCACCCACAGAAGCAACATTGTGTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_l03.g1 MSMg01no273_l03.g1 CHROMAT_FILE:
MSMg01no273_l03.g1 PHD_FILE: MSMg01no273_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:07 2005
         (308 letters)



>mm_chr12_35070228_35070935
          Length = 708

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaggagaaaactcactccggaagatttatcattctcttcacaagcatgaccacta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 508 caggacaggagaaaactcactccggaagatttatcattctcttcacaagcatgaacacta 449

                                                                       
Query: 61  tttccacagaaagatgcttaaccatgcagaaatcacatcttatatcatctctttgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttccacagaaagatgcttaaccatgcagaaatcacatcttatatcatctctttgtgtgt 389

                                                                       
Query: 121 tttcgacagctttaacagatagaaattatgaatttttatccccagtgtatgtatatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttcgacagctttaacagatagaaattatgaatttttatccccagtgtatgtatatttag 329

                                                                       
Query: 181 actatggcactcagtgttttgacaaccttaaggaacaaacaaacaaataaacaaagactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 actatggcactcagtgttttgacaaccttaaggaacaaacaaacaaataaacaaagactt 269

                                                                       
Query: 241 tctttatcctagaaccacttggttttaccttgtttcacctgggttttgtttctcctgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctttatcctagaaccacttggttttaccttgtttcacctgggttttgtttctcctgtta 209

                   
Query: 301 ggagtcaa 308
           ||||||||
Sbjct: 208 ggagtcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)