BAC Information

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BAC

Clone NameMSMg01-274C02
Chromosome12 (Build37)
Map Location 119,828,446 - 120,010,119
singlet/doubletdoublet
Overlap geneLOC668611, EG668615
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4, LOC100042993
Downstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C02.T7 (MSMg01no274_c02.b1)MSMg01-274C02.TJ (MSMg01no274_c02.g1)
ACCAG412946AG412947
length721724
length of high quality
(start - end)
296 (66 - 361)647 (76 - 722)
definitionCHROMAT_FILE: MSMg01no274_c02.b1 PHD_FILE: MSMg01no274_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:37 2005CHROMAT_FILE: MSMg01no274_c02.g1 PHD_FILE: MSMg01no274_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,009,827 - 120,010,119)(119,828,446 - 119,829,092)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGCTGCCTGCGTCATACATTCAAATTGTTTGGGCTAGGCAAG
GTCTAGAACTCTAGTTTCATACCCTATATAATGTCTTCACAACACATGAA
ATTATCTGGACTTCTACTCTTCTCCTGCATCCATATAATTCTGTGTTATA
AACACAGGAACTTGTAGTGACCGGAAAAACAGCCTGTAATTTAAGGTAAG
AATTGTCTAACCATAGGAGGCAAGTCTATACAGATATGGTTTTTAAAAAA
AAGTATGAACACTACCTGATTTTCTGAATAGAATGAATTCAGTAGCTTCT
CCGTAATATTTTATTATCTGACACCTGCCAATGTTGTAGGTACTAACTGA
CTATTTGTCGAATGCATTTATGAATGAACAAGAAGGATATGCTTTGCTGG
CAAGGTTGAAATGAGGAATCTCAGCACAGGCAACAAGTGGGTCAGCATTT
GTTGAAGCCTCAGAAAGAGGTTGTGTGTGAGTTATTAAGTAGTGCCAGTG
ATATCAAGACTGGATTCCATTAAGCCCCAGGCTAAAGGGCGAACAGCTAA
TTTCCTAGCTGTACTAAATAGTTATATCAGATATCAGTCAAGGTGATATA
GGCTTCTAGATCCCTTGGAAATCACTAAGGGGCAGAGGCCAGAAATTATT
ATAAGCTTGACTAGGAATTCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGTTGCATTTTATGACCGGAGC
TCAAGACTGAAATTTTACTTACCAGCTGGTGTTCAGGCACTGAGATCTGT
GAGTTAAGGTTCTCCCTTAAGCTGCTCTGTTCCCAGTCATCAGTACAGAC
CCAGTGAGCCAGATTAGATTTTAGATACACTATTTGTATATTATTGCTGA
TATACATAAATCATACATCAAACACATGCTTTCTTTATGTCTATCATGTA
CTATGGAGAAAAGAGAGGTCAGATTATGCTGAATAAATAACTCACGAGAC
TTTAGATATTCCTCTCCCAAGATGTTCAAGAATTCATGATCTCAATTTTT
AGTTTACAGGAGTCAATTTTGTCACATTTCCCCATGAAATGTAGTGTTGA
AATATAAAAGCTTTATATGAGTTTCCACAGGTAAGTTACTTGAGAATGGC
TGGGGAATCACTCAGCAGAATGCTTGCTTAGCATGCATGAGCAAGCTTGG
TTCTATCTATTCCTAACACTGCATAAGCTTAGCCTAGAGGCTCCCAGGGT
TGAGAGGGAGTGGTGGATGTAGGAAGATCAGTAGAGCAAGATGGATCTCA
GCTGCACCAGAATTTGAGGTCAGGATAGGATATATGAGATATTGTCGCAA
TAAAACAAACAAAACACAGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c02.b1 MSMg01no274_c02.b1 CHROMAT_FILE:
MSMg01no274_c02.b1 PHD_FILE: MSMg01no274_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:37 2005
         (296 letters)



>mm_chr12_120009627_120010322
          Length = 696

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcgtcatacattcaaattgtttgggctaggcaaggtctagaactctagtttcataccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 493 tgcgtcatacattcaaattgtttgggctaggcaaggtctagaactctagtttcatatact 434

                                                                       
Query: 61  atataatgtcttcacaacacatgaaattatctggacttctactcttctcctgcatccata 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atataatgtcttcacaacacgtgaaattatctggacttctactcttctcctgcatccata 374

                                                                       
Query: 121 taattctgtgttataaacacaggaacttgtagtgaccggaaaaacagcctgtaatttaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taattctgtgttataaacacaggaacttgtagtgaccggaaaaacagcctgtaatttaag 314

                                                                       
Query: 181 gtaagaattgtctaaccataggaggcaagtctatacagatatggtttttaaaaaaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtaagaattgtctaaccataggaggcaagtctatacagatatggtttttaaaaaaaagta 254

                                                                
Query: 241 tgaacactacctgattttctgaatagaatgaattcagtagcttctccgtaata 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgaacactacctgattttctgaatagaatgaattcagtagcttctccgtaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no274_c02.g1 MSMg01no274_c02.g1 CHROMAT_FILE:
MSMg01no274_c02.g1 PHD_FILE: MSMg01no274_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:38 2005
         (647 letters)



>mm_chr12_119828246_119829292
          Length = 1047

 Score = 1166 bits (603), Expect = 0.0
 Identities = 636/647 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagttgcattttatgaccggagctcaagactgaaattttacttaccagctggtgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 cacagttgcattttatgaccggagctcaagactgaaattttacttaaaagctggtgttca 260

                                                                       
Query: 61  ggcactgagatctgtgagttaaggttctcccttaagctgctctgttcccagtcatcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ggcactgagatctgtgagttaaggttctcccttaagctgctctgtccccagtcatcagta 320

                                                                       
Query: 121 cagacccagtgagccagattagattttagatacactatttgtatattattgctgatatac 180
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagactcagtgagccatattagattttagatacactatttgtatattattgctgatatac 380

                                                                       
Query: 181 ataaatcatacatcaaacacatgctttctttatgtctatcatgtactatggagaaaagag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatcatacatcaaacgcatgctttctttatgtctatcatgtactatggagaaaagag 440

                                                                       
Query: 241 aggtcagattatgctgaataaataactcacgagactttagatattcctctcccaagatgt 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aggtcagataatgctgaataaataactcacgagactttagatattcctcttccaagatgt 500

                                                                       
Query: 301 tcaagaattcatgatctcaatttttagtttacaggagtcaattttgtcacatttccccat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 501 tcaagaattcatgatctcaatttttagtttacaggagtcaattttgtcacattttcccgt 560

                                                                       
Query: 361 gaaatgtagtgttgaaatataaaagctttatatgagtttccacaggtaagttacttgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgtagtgttgaaatataaaagctttatatgagtttccacaggtaagttacttgaga 620

                                                                       
Query: 421 atggctggggaatcactcagcagaatgcttgcttagcatgcatgagcaagcttggttcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 atggctggggaatcactcagcagaatgcttgcttagcatgcatgagcaagcgtggttcta 680

                                                                       
Query: 481 tctattcctaacactgcataagcttagcctagaggctcccagggttgagagggagtggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctattcctaacactgcataagcttagcctagaggctcccagggttgagagggagtggtg 740

                                                                       
Query: 541 gatgtaggaagatcagtagagcaagatggatctcagctgcaccagaatttgaggtcagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgtaggaagatcagtagagcaagatggatctcagctgcaccagaatttgaggtcagga 800

                                                          
Query: 601 taggatatatgagatattgtcgcaataaaacaaacaaaacacagctt 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taggatatatgagatattgtcgcaataaaacaaacaaaacacagctt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)